CANTATAdb - search

Detailed information on CNT30101365

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000206, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30693279	Oryza rufipogon	Oryza sativa	100	25.37	94.89	509	forward
CNT30577858	Oryza rufipogon	Oryza barthii	100	35.95	95.28	509	reverse complement

Expression of CNT30101365

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MMWGCVLWVQWYTSDQSKTIRIAVPAVMGGSNNVFRD*

>peptide 2 (30 aa)
MVRCSELCYARGIVTTPFRGTVVVLRHMVT*

>peptide 3 (48 aa)
MSFVISLTLLTIIKDAITDNNLISSWFGMVHSWFGDRTVQPGWLFSMVG

Sequence

>CNT30101365
TTTCGGTTGTGAAACATTAACCGTGCCAACCACAAGCTAGCGTGGGCAACGGCTTTACCTTTTGTATAACATGGTTCATTGCGGGGCACCAGACTGAGAA
GTGGCGGAGATAAGCCCACGGGGGTCGCTGGGGAGTCCATGCCTTGTTTATAAGGGGGTGATTATGATCCAGGAATGGTGCGCTGCAGTGAATTGTGTTA
TGCAAGGGGTATTGTCACAACTCCTTTCCGAGGTACCGTGGTGGTATTGAGGCACATGGTGACATGATGTGGGGTTGTGTCTTGTGGGTACAGTGGTACA
CCTCTGATCAGAGTAAAACTATTCGAATAGCCGTGCCCGCGGTTATGGGCGGGTCTAACAATGTCTTTCGTGATTAGTCTCACACTTCTCACCATAATAA
AAGATGCTATAACTGATAATAATTTGATTAGCTCCTGGTTTGGAATGGTACATTCCTGGTTTGGAGATAGAACTGTGCAGCCGGGGTGGTTGTTCAGTAT
GGTTGGGCC