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Detailed information on CNT30101348


BLAST search results

BLAST vs Swiss-Prot:
sp|P69310|UBIQ_AVESA, E-value = 1e-36

BLAST vs NONCODE:
NONSTUT000620, E-value = 2e-27

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693149Oryza rufipogonOryza sativa27.6710097.19498forward
CNT30553477Oryza rufipogonOryza glaberrima25.8310095.27465forward
CNT30369993Oryza rufipogonOryza glumipatula20.9494.4999.73377forward
CNT30576255Oryza rufipogonOryza barthii70.227997.781264forward
CNT30580001Oryza rufipogonEchinochloa crusgalli11.528.3692.27207forward
CNT30116557Oryza rufipogonOryza nivara26.6195.6199.58479forward
CNT30604038Oryza rufipogonOryza punctata40.2842.1886.48725forward

Expression of CNT30101348

Peptides detected in this lncRNA

>peptide 1 (34 aa)
QQARATVAGYDHVSNAQTESHLGSNISETLREVE*

>peptide 2 (94 aa)
MLHHSTRSETTTEAQDKVQGGLLLDVIVGKGAAILELLAGEDEALLVWRDALLILDLGLHVVDGVRGFNLQSDGLASEGLNEYLHLEEARKDWN*

>peptide 3 (45 aa)
STGTRNSGRLRPCEQCTNRISSRIKHLRNIKRSRMIISSIGTDAQ*

>peptide 4 (79 aa)
MRRCWSGGMPSLSWILAFTLSMVSEDSTSRVMVLPVRVLTNICIWKRQERIGINIGKKKQLENKLAPDPTISVLSAQNR*

>peptide 5 (38 aa)
MTDERHRYNEVQCCTTAHAQRPPRRRRTRCRVDSFWML*

>peptide 6 (45 aa)
MKSNAAPQHTLRDHHGGAGQGAGWTPSGCYSRQGCGHPRAACRRR*

Sequence

>CNT30101348
TCAACAGGCACGCGCAACAGTGGCCGGTTACGACCATGTGAGCAATGCACAAACAGAATCTCATCTCGGATCAAACATCTCAGAAACATTAAGAGAAGTA
GAATGATAATATCATCGATTGGTACCGATGCACAGTGAAGCAAATTGTACTAGTATGGATAATAGTATCAACACAACTTAGGGACTCTAAACCAGAACAC
AACACAACCATGACACGATGATATGACAGACGAGCGGCATAGGTATAATGAAGTCCAATGCTGCACCACAGCACACGCTCAGAGACCACCACGGAGGCGC
AGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTATAGTCGGCAAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTG
GAGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCAGAGGATTCAACCTCCAGAGTGATGGTCTTGCCAGTGAGGGTCTTAAC
GAATATCTGCATCTGGAAGAGGCAAGAAAGGATTGGAATTAACATAGGTAAAAAAAAGCAGCTGGAGAATAAGTTGGCACCAGATCCTACGATATCGGTA
CTGTCAGCTCAAAATAGATGAACATATCAATCACATCATACTACACTACAATTGGACAGCATCATTAATCATAAGAGCGCTGCTCACAGCTCACACCACA
TCAACAAGCAACAACCAAAAATATCTTCAGATAATAACAAAACTGACATAAGTAACTACAGGACAACAGATCTATGTAAGAACACGGAATAAAGCCACCT
AGTTCTAGCATCTGACAGATTTGATTTGCACGAGTAAAGCAAATAAAACGGGTAAAAAACACAGTACAACATCAGCACTACAGTTCAACTAGGCAAAGAG
CCAGATACAATACAGATTAAATTGACCTTAGAACCCAAGCTCTACAGTTCAAGTAGGTGTACACGATACAGATGTAATTCTCTAACCCAGCTCCACACAA
TTCCAATCCAAATCCAGGGGAAAAAAACTAAGAACACAATTCCAATCCAAATCCAGAGGAAATAAACTATGTGTCGCCTAACTCAACCTAAAGATTTTAA
CCTAACGAGCTATTCATCTATTGGAACAATATCAGAACAATCCCATCCGAACTAAGCACAAATAAGTAAAACTAAATCTGATCACAAAACTCAAACTATG
TGGCAGGATCAAAACATAACTGTGAACTACTCTTATTATCCATCATTAGGGTAATATATCGAAACAATCCCCATCTGACACATCATTAGGGTAATATATC
GAAACAATCCCCATCTGACACATCATTAGGGTAATATATCGAAACAATCCCCATCTGACACATCATTAGGGTAATATATCGAAACAATCCCCATCTGACA
CATCATTAGGGTAATATATCGAAACAATCCCCATCTGACAGAACAATCTCAAAACCAATCCATCTATTAGATCGATATAAATAACACAGATCCCTACCTC
GATTCTCACGAAACCCTAAATCAATGAGAGATTAAGAGGATTACCCTAAAATCGCACGAAACCGTAACTCGATTAAGAGGTGGATCACCCTAAAATCGCA
CGAAACCCTGAGAGATTGAGACTAACTCGCACGGGATCCTCCTACGCTTTCCACCACGAGCATCAAAATCGCGAGATTAGACGGGCACCACGAGAGATTC
GAGGATTAGGACGAGGTGATTGATTAGTTACCTTGACGAGGCGATTAGAGAACGCAAAGCTTCGCTCCCCCTCCCCTTCGGTCGATTCGACTCGCTATGC