Detailed information on CNT30101341


BLAST search results

BLAST vs Swiss-Prot:
sp|A2XZ94|PSBS2_ORYSI, E-value = 6e-16

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693167Oryza rufipogonOryza sativa87.1386.94100386forward
CNT30674846Oryza rufipogonSetaria viridis38.633.488.89171forward
CNT30222634Oryza rufipogonHordeum vulgare20.7729.1188.0492forward
CNT30456759Oryza rufipogonSaccharum spontaneum25.5124.1591.15113forward
CNT304942Oryza rufipogonZea mays26.1932.7790.52116forward
CNT30596071Oryza rufipogonOryza meridionalis74.2786.5894.53329forward
CNT30576149Oryza rufipogonOryza barthii10090.41100443forward
CNT30604008Oryza rufipogonOryza punctata46.0559.6597.55204forward

Expression of CNT30101341

Peptides detected in this lncRNA

>peptide 1 (74 aa)
MRGGLGSLVVVVVGDELAGSGVDGGEEEEEDVEEEERLDLVDGDAGLDVELRQDALAGDRLAEEGRREPQHGHPP

>peptide 2 (51 aa)
MAAKKKKRMLKRRSGSISLMGTPVSMLSCARMPLPVTASPRRDAANPSMATL

Sequence

>CNT30101341
ACATCCAACAGAGTCGAGAATTTGGAAGGTTCACCCATCATGCATTCAGGAGTACCGATTGATTGTTGTGTCCTGAATTTTTGCTAGTATATGCATATAA
GTAGATACTACTCCACTACAGTACAGAGGAGAGGATTGACATTGACTAGCTAGTCCACTTAACCGTCTCCTTACTACTATCAGAAGAAGCTAATTTAATT
AAGTGGAGTAAAAGCAAAATGAGGGGTGGGCTGGGCTCATTGGTCGTCGTTGTCGTCGGTGACGAACTTGCCGGTTCCGGGGTTGATGGCGGCGAAGAAG
AAGAAGAGGATGTTGAAGAGGAGGAGCGGCTCGATCTCGTTGATGGGGACGCCGGTCTCGATGTTGAGCTGCGCCAGGATGCCCTTGCCGGTGACCGCCT
CGCCGAGGAGGGACGCCGCGAACCCCAGCATGGCCACCCTCCC