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Detailed information on CNT30101338


BLAST search results

BLAST vs Swiss-Prot:
sp|O65660|PLAT1_ARATH, E-value = 2e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553468Oryza rufipogonOryza glaberrima59.8292.1493.65457forward
CNT30108589Oryza rufipogonOryza longistaminata59.0381.8593.57451forward

Expression of CNT30101338

Peptides detected in this lncRNA

>peptide 1 (32 aa)
GLDAACTFHIEIMPTQKRYMEINKPVMVTLKV*

>peptide 2 (56 aa)
MHDSTSSRAVDHIRVRYIITRESKENLRFIYSTVTLGSSASAAAASLALLQLSTTA*

>peptide 3 (66 aa)
MRPPHRSRSRIRTPEPSAPSSVTPITESVPPFQIVPVRTYIVYTHLFSGSDDASATVIPSAAAAASS

Sequence

>CNT30101338
GAGGTCTCGATGCCGCATGTACATTTCATATAGAGATTATGCCGACACAAAAACGATACATGGAAATCAATAAGCCAGTCATGGTGACATTGAAGGTGTG
AATGGAGTGATGCTGACATGTTACCAACTGGAGTGAGCACCGGATCGTCCGACCGATCCAACGCTGGTTTCATCTTATTACCCTCTTAAAATCGTATAAT
TATTTTAGCATCCTCCCCTCAATGTAAAAAAAAGGATCAATCGCTGCAATGCACGACAGCACGAGCAGTCGAGCAGTAGACCACATACGCGTAAGGTACA
TAATTACACGGGAATCCAAAGAGAATCTACGATTTATTTACAGCACGGTGACCCTCGGCTCGTCGGCGTCGGCGGCGGCGGCGTCCTTGGCCTTGTTGCA
GTTGTCGACGACGGCGTAGAGGCGGTAGTTGCAGTACCAGCCGTGGTGCGGGCCGGTGCCGTCGGAGGTGAGGTTCATCCGGCACGGCGCCTGGCGCATG
CAGGGGCCGCGGCCGCTGAAGATGTCGAGGTTGCCGCGTTCGTAGTAGTCGTGGCCGTCGCCCATGAGGCCGCCCCACCGCTCCAGGTCGCGGATCCGCA
CCCCGGAGCCGTCGGCGCCCAGCAGCGTCACGCCGATCACCGAGTCCGTCCCGCCCTTCCAGATCGTCCCCGTCCGCACGTATATCGTGTACACGCACTT
GTTCTCCGGGTCCGACGACGCCTCCGCCACCGTGATCCCCTCAGCCGCCGCCGCCGCGTCGTCG