Detailed information on CNT30101305


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XKF3|PORA_ORYSJ, E-value = 2e-52

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693116Oryza rufipogonOryza sativa58.6935.11100277forward
CNT30672913Oryza rufipogonSetaria viridis10.3824.2693.8849forward
CNT30521311Oryza rufipogonSetaria italica58.6923.2890.97277forward
CNT30658921Oryza rufipogonTriticum dicoccoides39.8327.6985.11188forward
CNT30585175Oryza rufipogonEchinochloa crusgalli40.8940.1291.19193forward

Expression of CNT30101305

Peptides detected in this lncRNA

>peptide 1 (32 aa)
LVRLGAVEALRAVDHRRPVLPAEPAGEPPEVA*

>peptide 2 (60 aa)
LYALAPSKLSAPSIIADPFCPRSPPASPRRSPSPALGGTLPARVLVLPVMEPRMMSRRDG*

>peptide 3 (87 aa)
MRRARRKWPRWFTPTLISYPSAVHDGVAPRRHPRRLRRRRRLQEVAARHHHVPLPRLRQRLRRREPEPRRRAGDHHHPLPQRLLPVRL

>peptide 4 (48 aa)
CTPWRRRSSPRRRSSPTRSARGARRRAPGGRLARPWEGRCRRGCWCCR*

Sequence

>CNT30101305
CTTGTACGCCTTGGCGCCGTCGAAGCTCTCCGCGCCGTCGATCATCGCCGACCCGTTCTGCCCGCGGAGCCCGCCGGCGAGCCCCCGGAGGTCGCCTAGC
CCGGCCTTGGGAGGGACGTTGCCGGCGAGGGTGTTGGTGTTGCCGGTGATGGAGCCGAGGATGATGAGCCGCCGCGACGGGTAGTCGGATTTCTTGAGGT
CGTCGAGCATGAGGCGGGCGAGGAGGAAGTGGCCCAGGTGGTTCACCCCGACGCTCATCTCGTACCCGTCGGCGGTGCATGACGGTGTAGCTCCCCGCCG
CCATCCCCGCCGCCTTCGCCGCCGTCGCCGCCTTCAGGAAGTCGCGGCACGCCATCACCACGTGCCACTTCCCCGTCTCCGCCAGCGCCTTCGCCGCCGC
GAGCCCGAGCCCCGACGACGCGCCGGTGATCACCACCACCCCCTGCCGCAGCGTCTTCTTCCCGTCCGCCTT