Detailed information on CNT30101296


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524011Oryza rufipogonSetaria italica18.9630.2894.5109forward
CNT30290212Oryza rufipogonTriticum aestivum27.4869.696.84158forward
CNT30244584Oryza rufipogonAvena sativa28.3544.994.48163forward
CNT30151725Oryza rufipogonBrachypodium distachyon28.3557.1996.32163forward
CNT30576176Oryza rufipogonOryza barthii39.4867.9699.12227forward
CNT30116652Oryza rufipogonOryza nivara43.1369.8699.6248forward

Expression of CNT30101296

Peptides detected in this lncRNA

>peptide 1 (90 aa)
MTSGSGTSSLALSKSMVQLTTAPSAAGAADGAGGLAVALDGLDALVLLGEDLGEQLRRVAQRRPQLVRRRLHLHHQLNLGRHDLSLSLNL*

>peptide 2 (59 aa)
MLLYCSGKILGNSSVESRSAVHSLSAGDFTSTTSSTLDAMISLSPLISSSHYLPADECEC

>peptide 3 (49 aa)
KRFNLNTLLFTHAPIRTLIRGRQWLAGELANATPRYCDRVRRRLTARTL*

Sequence

>CNT30101296
TAAACGGTTTAACCTGAACACTTTATTATTCACTCATGCACCGATACGTACACTAATTCGTGGGAGACAGTGGCTAGCCGGAGAGCTAGCAAATGCAACA
CCCCGATACTGCGACCGTGTGCGACGACGACTGACGGCGAGGACGCTATAGTGGACTCTAACACATAAGCCACGCACCCGCACGGCGGCGCTCGATCTGG
CTGTCTGGCTAGTTCTTGAGGAGGTAGTCGTCGAGGTCGTGGAAGGTCTTGGCGGCGGTCTCCTTGATGACGTCCGGGTCGGGCACCTCCTCGCTGGCCT
TGTCGAAGTCCATGGTCCAGCTCACCACCGCGCCGTCGGCGGCGGGGGCGGCGGACGGTGCCGGCGGACTTGCCGTCGCCCTCGACGGTCTCGATGCTCT
TGTACTGCTCGGGGAAGATCTTGGGGAACAGCTCCGTCGAGTCGCGCAGCGCCGTCCACAGCTTGTCCGCCGGCGACTTCACCTCCACCACCAGCTCAAC
CTTGGACGCCATGATCTCTCTCTCTCCCTTAATCTCTAGCTCACACTACCTACCAGCTGATGAATGCGAATGTTA