Detailed information on CNT30101272


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30111530Oryza rufipogonOryza longistaminata12.8246.2897.41193forward
CNT30575975Oryza rufipogonOryza barthii31.545.1997.89474forward

Expression of CNT30101272

Peptides detected in this lncRNA

>peptide 1 (30 aa)
AMHAACICFAYVYGAAQCVHGKKLVVVWCS*

>peptide 2 (93 aa)
MHGHWKENSPCIVGREEREMDSERDHQLMQCKDHSVTGGSVYGDASFSPSHTHLLPSISLTRTHKNTHDCFCFMVVSLHSSDFANYNINHQGF*

>peptide 3 (79 aa)
MCVRARWSYAHAATRHPIHRPLAAFWSARMLALRQPNSLLQRRALHCMHLYLMIYLSSISRSQVSSPRDFASISQRRKW*

>peptide 4 (87 aa)
MLASLPLTLIFYPQSLSLAHTRTHTIAFVLWSFLYIPATSQTIISIIRAFKCKCKCKSEPLVTVSMCIVQLCITVHMQLCMRPRAHA*

>peptide 5 (35 aa)
MLICNITIHKHASSNLISTSCDKNNKFDCEYTYTS*

>peptide 6 (40 aa)
MLDKLIAASLAETVLNTRVNVQPFLACHLNSYENFFKKLT*

>peptide 7 (33 aa)
MHSGEGGKRNGFGERSSTDAMQGPLSHGRERIR*

Sequence

>CNT30101272
GCCATGCATGCAGCATGCATATGCTTCGCTTATGTATATGGCGCGGCGCAATGTGTCCACGGAAAGAAGCTAGTAGTAGTATGGTGTAGCTGAGCTGAGC
TGCTTCATCTGCATCCTGCGCGCGCGGCCTTTGGATCGCGGCGCAGCGCAGCCCTGCCCCTTGTTTCTCCCCTCTCTCGGTATGCTCGCCGTGCATGCAT
GGGCACTGGAAAGAGAATAGCCCATGCATAGTGGGGAGGGAGGAAAGAGAAATGGATTCGGAGAGAGATCATCAACTGATGCAATGCAAGGACCACTCAG
TCACGGGAGGGAGCGTATACGGTGATGCTAGCTTCTCTCCCTCTCACACTCATCTTTTACCCTCAATCTCTCTCACTCGCACACACAAGAACACACACGA
TTGCTTTTGTTTTATGGTCGTTTCTTTACATTCCAGCGACTTCGCAAACTATAATATCAATCATCAGGGCTTTTAAGTGCAAGTGCAAGTGCAAGTCAGA
GCCACTTGTTACTGTATCAATGTGTATTGTGCAACTGTGTATTACTGTGCACATGCAACTTTGCATGAGGCCGCGTGCACATGCATGAGATCGCAGTGTC
CTGACAGTAAATCAAGAGGCTAAAGTATACTGGGGAGGCCTGTACGTAGCAGTCAGTGGCAGTATAGTGCTCAGTTGCTCACAAGACAACAGAGCTCGCG
AAGTGTTGGGGCCATGTTGGATAAGCTGATAGCCGCTAGCCTAGCGGAAACTGTTTTAAACACTCGGGTGAACGTCCAACCGTTTCTTGCATGCCATCTA
AATAGTTACGAAAATTTTTTTAAAAAATTGACATGATATGTTAATATGTAATATAACAATTCACAAACATGCAAGTTCAAATTTGATTTCTACAAGTTGT
GACAAAAATAACAAATTTGACTGTGAATATACGTATACTAGTTAGAGTTTGATTTGTTATTTTTGCTACAACTTGTAGAAGTTAAATTTGAACTTGCATG
TTTGTGAAGTGATATATTACATATTAATCTATCTTGTGAATTTTTTTGGATTTTTTTCATAATCATTTAGGTGCCATGAAAGAAACGGGTGACGTTCACC
CGAGAGATTAGAATCCATCCTCCCTAACCTAGCTGCTGTTGTGCACCGGCAGGGTGAGGTACTGGAACAACTCAGGGGGAAAAGGACGGCGACCTCTCCC
CTTCATGTGCGTCCGTGCACGCTGGTCCTATGCGCACGCCGCAACAAGGCATCCCATCCATCGTCCCCTGGCGGCGTTCTGGAGTGCGCGTATGCTAGCC
CTGCGACAGCCTAACAGCCTATTGCAGCGTCGCGCTCTGCACTGCATGCATCTTTATCTCATGATATATCTCTCCTCGATCTCTCGCTCTCAAGTTTCCT
CCCCCCGTGATTTTGCGAGTATAAGCCAGAGAAGGAAGTGGTGAATTATTACTGCCTTGCATCCACTGCCTGCCGTCTGAAACGTAATCATCAGGTGGAT
CAGCG