Detailed information on CNT30101202


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000181, E-value = 5e-102

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693263Oryza rufipogonOryza sativa20.8829.4487.4373forward
CNT30116562Oryza rufipogonOryza nivara45.0250.7998.51804forward

Expression of CNT30101202

Peptides detected in this lncRNA

>peptide 1 (33 aa)
QPSSLSSPLLSLSHASHRLISLTGALPTKYSRQ*

>peptide 2 (89 aa)
MIKPPQLPLLLPELSSCPRRSGLLSQCLCMKPPSLDARRSGTSSAADATFPCPPEHQRPSLPPLSSLARSREEDDGRKKDKKKREKRKA*

>peptide 3 (95 aa)
MGMFARSTGPYIRLLVVKPSKVKCAAPSTPRLYAYCGWSFTIPSTSTARRTVSSRAMCDPSRSVTTHGCRSNTSASLNLHEPPTSLVDMLSVDTG*

>peptide 4 (44 aa)
MRTVVGALLFPRPPQHAAQLALGLCVIQAAPSPPTVVGVTLPPR*

>peptide 5 (74 aa)
MRVAREHHLPPTLPFPVHRSTSALLSLLSVPWQEAEKRMMGGRRTRKRERKEKPDKWAHKQYCLHFSISSYKTF*

Sequence

>CNT30101202
ACAACCGAGCTCTCTGAGCTCTCCTCTTCTCTCTCTCTCCCATGCTAGCCATCGGTTGATCTCCCTCACCGGAGCATTGCCGACCAAATACTCGCGCCAA
TAGCTTCGCCTCAATGAAGTGAATCCATTTTCCTACTTTCCCCTCTTCCCTACCCATTCCATGATCAAGCCACCACAGCTACCTCTTTTGCTGCCGGAGT
TGAGCTCTTGCCCTCGCCGTTCCGGCCTCCTCTCTCAGTGCTTGTGTATGAAGCCACCCTCCCTAGATGCGCGTCGCTCGGGAACATCATCTGCCGCCGA
CGCTACCTTTCCCTGTCCACCGGAGCACCAGCGCCCTTCTCTCCCTCCTCTCAGTTCCCTGGCAAGAAGCAGAGAAGAGGATGATGGGAGGAAGAAGGAC
AAGAAAAAGAGAGAGAAAAGAAAAGCCTGACAAGTGGGCCCATAAACAGTACTGTCTCCATTTCTCGATTTCAAGTTATAAGACGTTTTGACTTTGGTCA
AAGTTAAACTGTTTAGTTTTACTAAGTTTATAGATAAATATAATAATATTTATAATACTAAATTAGTTTCAACAAATCAATAATTGAATATATTTTCATA
GTAAATTCGTCTTATGTTGAAAATGTTACTACTTTTTTTCACAAACTTGATCAATCTTAAAACAGTTTGACTTTGACCAAAGTCAAAACGTCTTATAACA
TGAAACGGAGGGAGTAACCTTTAGTATTTTCTAGATTTAATCCAAATCCTATTATTTAGAAGCCCATATCTCCTAAACCATATATCCGATTCCAATGAAA
CTTGACCTAAATTCATCTAAATTCAAACTCTACATTTTGATATCAGACTTGCTATTTTAAGATTTATTTGAATTTCCTTAATTACCATTTGAATTTATAT
TTGATTCAAACTTATATTTGAATTCTTACTTTAAACTTATATTTGATTATCGCATATCTTCTTTCATTCCAAAATACCCATTAGCCCCTAAAGAGCCGCC
GGTTGGAACTTTACGCCTTTCATGGGGATGTTTGCCCGGTCTACTGGCCCTTACATCAGACTGTTGGTTGTAAAGCCCAGCAAGGTCAAATGTGCTGCTC
CTAGCACCCCACGCCTCTATGCGTACTGTGGTTGGAGCTTTACTATTCCCTCGACCTCCACAGCACGCCGCACAGTTAGCTCTCGGGCTATGTGTGATCC
AAGCCGCTCCGTCACCACCCACGGTTGTCGGAGTAACACTTCCGCCTCGCTAAACCTGCATGAGCCTCCTACTTCTCTAGTCGATATGTTGTCTGTTGAC
ACCGGCTAGAGAAGTGTTAACGATCAAATTTGGTAGTTTTAGTATCGGAGATGGAGATAAAACCGAAGCGGAATCTAAGGATGGATCGTTCCGGGAACAG
AGCAAGAATCAGCTGAAGTCCGAATCGGCTGCAACCAGAATCGACAGAGTTCGAGTCGGACAAGGTTAGCCGATTAAACCGATTCCGACAATGTAACTCG
ATACACGTTGTCGGGTTGAGTTAATGTGCTTCATGTGGATTGCCATGCACGGATTAAGTCCTGAGAAGGCAAGTGTATCTATCAATTAGGATATTTTATG
TAATTTCCTTAGAGATAAGTTTGGGCAAAAGTCTGCCGCAAAGACTTATGGTATCTTAGAGTTTGGTTAGAGATAAGAGTCGTGTCCTGACATGGACATA
TTTTGTAATCTCGGGTATAAATAGACCCCGAGCCCCATGTAATCAATCTAACACACACGTTCAATACAATCTCGGCGCACCGCCAC