CANTATAdb - search

Detailed information on CNT30101184

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001594, E-value = 1e-149

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30673303	Oryza rufipogon	Setaria viridis	24.15	55.56	87.57	185	forward

Expression of CNT30101184

Peptides detected in this lncRNA

>peptide 1 (31 aa)
GIWERNQIASSTSSADLMKSMLFTLEGKRGK*

>peptide 2 (48 aa)
MSTCWKDLVVYFQLCVASPSSLTQAAQNDENSSLHQKLGLGPCIITAH*

>peptide 3 (44 aa)
MTKIVLYIRNLGLGLVSLQPIRGPQNLGFAPTSSPSHSSNYIHS*

>peptide 4 (54 aa)
MSTCWKDLVVYFQLYQCSSLRRANGANEYLLERSRRLLSAMCGLTIKFDPGCSE*

Sequence

>CNT30101184
TAGGAATATGGGAGAGGAACCAAATCGCAAGCAGCACTAGCAGCGCTGATTTGATGAAGTCAATGCTCTTCACTTTGGAGGGCAAACGGGGCAAATGAGT
ACTTGTTGGAAAGATCTCGTTGTCTACTTTCAGCTATATCAATGCTCTTCACTCCGGAGGGCAAACGGGGCAAATGAGTACTTGTTGGAAAGATCTCGTC
GTCTACTTTCAGCTATGTGTGGCCTCACCATCAAGTTTGACCCAGGCTGCTCAGAATGACGAAAATAGTTCTTTACATCAGAAACTTGGGCTTGGGCCTT
GTATCATTACAGCCCATTAGGGGTCCACAAAACCTAGGGTTTGCTCCCACCTCCTCTCCTAGTCATTCCTCCAACTATATACACTCCTAGCAGCCACCAT
TTTGCACTTTGGGTTTTGTTTTGATGTAAGTTTAGCTGCAGCTACTTCCTTGTACTCGCGTCTATCGGGTAGACCACCCGGATACTTGTATTCAGAACCC
CATTTTGGTTTGTTTAAGTTTCATCATTTGACAAGTGCCGTGAGCTGTTTCCTTGTCAACTTGTTCTTGCTTGTTCTTCGATTGCTTGCAGGTTCAAGGT
TGTTCTTGGCACGGCAAGAACAGCAACAACGTGGAGTCGGTGTACCGGTTGCTAAGGCGCAGCACCCCTGTGGTAGTTGTAGTCGGACCGCCAACGTCGT
ATCCTTCCCCAAATCGTAGTTTATCCTCCTCTCATCGAAAGATCGGGAACCCCCGTTGCTGCATCA