Detailed information on CNT30101172


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000540, E-value = 3e-75

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30272397Oryza rufipogonChenopodium quinoa23.714.7187.3687forward
CNT30403312Oryza rufipogonBeta vulgaris20.442.198875forward
CNT30198768Oryza rufipogonPisum sativum28.6121.2185.71105forward
CNT30433662Oryza rufipogonPapaver somniferum20.165.4990.5474forward

Expression of CNT30101172

Peptides detected in this lncRNA

>peptide 1 (60 aa)
FYCPVNFGSNSGFFLGSFGKKLEWNNIDSYRGKGSLLMQTLYLEDRDRGRGKNRNEINKE*

>peptide 2 (30 aa)
MKKWKLEKDPSDSQRMRGKGIDTEKDFFLL*

Sequence

>CNT30101172
GCTTTTACTGTCCCGTCAATTTTGGATCCAATTCGGGATTTTTCTTGGGAAGTTTCGGGAAGAAATTGGAATGGAATAATATAGATTCATACAGAGGAAA
AGGTTCTCTATTGATGCAAACGCTGTACCTAGAGGATAGGGATAGAGGAAGAGGGAAAAATCGAAATGAAATAAATAAAGAATAAAGCAAAAAAAAAATA
AGTCGAAGATAGAAGAGCCCAGATTCCAAATGAAGAAATGGAAACTCGAAAAGGATCCTTCTGATTCTCAAAGAATGAGGGGCAAGGGGATTGATACCGA
GAAAGATTTCTTCTTATTATAAGACGTGATTTGATCCGCATATGTTTGGTAAAAGAACAATCTTCTA