Detailed information on CNT30101150


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XKF3|PORA_ORYSJ, E-value = 3e-88

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693247Oryza rufipogonOryza sativa42.0238.59100274forward
CNT30672815Oryza rufipogonSetaria viridis13.525.8193.1888forward
CNT30592165Oryza rufipogonMusa acuminata10.1223.4995.4566forward
CNT30553602Oryza rufipogonOryza glaberrima39.1154.9698.82255forward
CNT30362130Oryza rufipogonSorghum bicolor14.5728.6191.5895forward

Expression of CNT30101150

Peptides detected in this lncRNA

>peptide 1 (64 aa)
SGGTPASSACYRSCCPCTPWRRRSSPRRRSSPTRSARGARRRAPGGRLARPWEGRCRRGCWCCR*

>peptide 2 (76 aa)
LRWNSCIVSMLQILLSLYALAPSKLSAPSIIADPFCPRSPPASPRRSPSPALGGTLPARVLVLPVMEPRMMSRRDG*

>peptide 3 (47 aa)
PVELLHRQHVTDLAVLVRLGAVEALRAVDHRRPVLPAEPAGEPPEVA*

Sequence

>CNT30101150
CTCCGGTGGAACTCCTGCATCGTCAGCATGTTACAGATCTTGCTGTCCTTGTACGCCTTGGCGCCGTCGAAGCTCTCCGCGCCGTCGATCATCGCCGACC
CGTTCTGCCCGCGGAGCCCGCCGGCGAGCCCCCGGAGGTCGCCTAGCCCGGCCTTGGGAGGGACGTTGCCGGCGAGGGTGTTGGTGTTGCCGGTGATGGA
GCCGAGGATGATGAGCCGCCGCGACGGGTAGTCGGATTTCTTGAGCGCGTCGAGCGGCATGCCGGAGCGCCGGAAGTTGTCCACGAACTGGCGGACGCTG
TCGAGGGAGGCGAGGTCCAGGTGCATGACGGTGTAGCTCCCCGCCGCCATCCCCGCCGCCTTCGCCGCCGTCGCCGCCTTCAGGAAGTCGCGGCACGCCA
TCACCACGTGCCACTTCCCCGTCTCCGCCAGCGCCTTCGCCGCCGCGAGCCCGAGCCCCGACGACGCGCCGGTGATCACCACCACCCCCTGCCGCAGCGT
CTTCTTCCCGTCCGCCTTCGACGTGCCCGCGCCGGGGCTCGCCACCGGCGCCGCCGGCGTCGCCACCGCCCTCACCACCAGCGACGGCTTCTTGGCCTTC
TGGCTCACGCTAAGGAACCCCGGCTCCTTCACCACCGCGCTCAAGTTACCCT