Detailed information on CNT30101149


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672423Oryza rufipogonSetaria viridis25.3227.9993.48138forward
CNT30179357Oryza rufipogonSecale cereale39.0821.9694.37213forward
CNT30386304Oryza rufipogonTriticum turgidum30.8331.2395.24168forward
CNT30553525Oryza rufipogonOryza glaberrima49.7238.2899.63271forward
CNT3017553Oryza rufipogonZea mays21.4745.3594.02117forward
CNT30349409Oryza rufipogonEragrostis tef41.2818.8192.44225forward
CNT30596052Oryza rufipogonOryza meridionalis49.7249.7298.89271forward
CNT30498207Oryza rufipogonDigitaria exilis32.4834.3789.27177forward
CNT30604057Oryza rufipogonOryza punctata21.4729.499.15117forward

Expression of CNT30101149

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MELILVKVSTLKVAPHMTPSLSTRGIAFSRFIGCSKLLSPPSLWNMHPTGNGAYDLPHPPFTISLSSQITTD

>peptide 2 (90 aa)
MSGGVVPGGGPVGGAADAGHGVDLGEGVDLEGGAAHDALAVHPRHRLQPVHRVLEALEPPLAVEHAPHRERRVRLAAPSLHDLPLVADHHR

>peptide 3 (42 aa)
MLRTEKLHRIERRRRRRRRRDERRRRPRWRPSWWRCRRGAWS*

>peptide 4 (38 aa)
RLSEANSFLFIIHSMYHDMPPATVNIHCREPKDGHKNF*

Sequence

>CNT30101149
TAGATTGAGTGAAGCAAACTCTTTCTTATTCATCATTCATAGTATGTACCATGACATGCCACCCGCGACCGTGAATATACATTGCCGAGAGCCCAAAGAT
GGACATAAAAATTTTTAAAAAAAGGGGTGAAAATTAAGTAAAAACACAGCAGAAAAATAGATTGGCGCGCTTCCACGCTAGCTGCAAATATATCGCTCTA
ATTATCTGCATGCTTCGGACGGAGAAGCTACATCGGATAGAGAGGAGGAGGAGAAGAAGAAGAAGAAGAGATGAGCGGCGGCGTCGTCCCAGGTGGCGGC
CCAGTTGGTGGCGCTGCCGACGCGGGGCATGGAGTTGATCTTGGTGAAGGTGTCGACCTTGAAGGTGGCGCCGCACATGACGCCCTCGCTGTCCACCCGC
GGCATCGCCTTCAGCCGGTTCATCGGGTGCTCGAAGCTCTTGAGCCCCCCCTCGCTGTGGAACATGCACCCCACCGGGAACGGCGCGTACGACTTGCCGC
ACCCTCCCTTCACGATCTCCCTCTCGTCGCAGATCACCACCGACC