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Detailed information on CNT30101102


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000044, E-value = 2e-145

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553255Oryza rufipogonOryza glaberrima53.6341.2898.71310forward
CNT30106410Oryza rufipogonOryza longistaminata52.2533.4496.03302forward
CNT30117174Oryza rufipogonOryza nivara35.297594.61204forward

Expression of CNT30101102

Peptides detected in this lncRNA

>peptide 1 (42 aa)
PPSLIAGVELLPSPFRPPPLTPSLGDHFPGCVSLGNTLGRRC*

Sequence

>CNT30101102
CCACCTTCTCTTATCGCCGGAGTTGAGCTCCTGCCGTCGCCGTTCCGGCCTCCTCCCCTAACTCCTTCGCTGGGCGACCACTTCCCCGGGTGCGTGTCGC
TCGGGAACACACTTGGCCGCCGCTGTTGAGGCCGTTCCACCATCGGAGCACCGGCGTCCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCTGTT
CACGGGAAGAAGAGAAGGAAGAAGAAGACGAGAGGAAGAAGAAGGAGAAAAGAAAAAAAAATAAAGAGCTACTGACAGAGATAAATTGAAGTTCTTGCCG
AAGCCAGGAGTTCAATCATATAAGTTTGTCTTATTTCAACCTAGTTCTCAAATATAGATTAATTAGATGGTTTAAGTCTATAGCAAAACCTTAGAGTTGA
GTCACACTATAGCTTCTGCTGTAATAGTTAGCCACAATCTTGTAAATTCCCCTATTATTTTATGTAATAACATCTCCTTTGGAGCCTTGTTCAAATGTAC
GCAATGAAGATCCAGATTGTTGAAGCTGTATCAATCTACTGATCCAGGGCTTGATACAGTTAAACATGTCGGTTTCCG