Detailed information on CNT30101096


BLAST search results

BLAST vs Swiss-Prot:
sp|Q42430|ZFP1_WHEAT, E-value = 3e-77

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697340Oryza rufipogonOryza sativa6.2924.1292.7137reverse complement
CNT30448746Oryza rufipogonSaccharum spontaneum17.0334.4282.21371forward
CNT301541Oryza rufipogonZea mays6.6134.1289.58144forward
CNT3067190Oryza rufipogonLeersia perrieri15.8959.4582.66346forward
CNT30369870Oryza rufipogonOryza glumipatula6.3420.4490.58138reverse complement
CNT30106850Oryza rufipogonOryza longistaminata4.5920.5393100reverse complement
CNT30578398Oryza rufipogonOryza barthii6.222.4694.07135reverse complement
CNT30603952Oryza rufipogonOryza punctata25.6751.2893.56559forward

Expression of CNT30101096

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MTVCMAMYHSLALYKSRNKLNNSGTKRINE*

>peptide 2 (58 aa)
MVEYGLQYMTVKEQSVKDTGTVPVLQRTKEELDLYLYDCMYGYVSLACSVQKQEQIKQ*

>peptide 3 (71 aa)
MLQRTVVLHTNQSPRLCLDLKFGSKLWFFFITSTCHTHTTFQSHHLQFQPKFKLYAELNTIQVWSNMVYNI*

>peptide 4 (78 aa)
MRRRRRLRHRRSASSCARRAPARWGTPSGRWNTCGLCWSCRRRTRRWMTWLARGPRRKAARRRRGREPRRELRAESAA*

>peptide 5 (61 aa)
MEHLWTLLVMPSEDAAVDDVAGSRSSAEGSKAATGAGAKTGAAGGVGSLTRWLVLWPPSAW*

>peptide 6 (64 aa)
MIMKSICVYVTAYCSTAHESISKAVFRSKVWIQTLVLFHHINLSYTHNFSVTSSSISTKIQTLR*

>peptide 7 (88 aa)
MRRQSARFSSSDRWRRDRFRFAHPCGRCPPSSPLVALLLVTTVASSTSCCCCSSLSTAAWSASMDDALDMLPPQFTKAASRSTTCYIR*

>peptide 8 (91 aa)
RLFVESDRFHPSIHPPRARGQVGKREVINAQPPARRRCRGLSTTSLPLLTLLPQWAPSIGVPKAAKPAGVCPFPTPEGTVAVTCHSTADPN*

>peptide 9 (80 aa)
GGCSSKAIGSIHPSIHRARAGRSASVKLSTHSRPPAVAVAAFPPPPSLSLLYYPSGRRRSAFPKLQNQPGFVRSQPRRVR*

>peptide 10 (86 aa)
MQLLNYAVRSRGFLKARGLWTSSSSSHIFLPLEHGRHTNSGTAGRLRSNARVADWPLPELPTSDSAATVARSSVEDAPAPAPTPPS*

Sequence

>CNT30101096
GGCGGCTGTTCGTCGAAAGCGATCGGTTCCATCCATCCATCCATCCACCGCGCGCGCGCGGGCAGGTCGGCAAGCGTGAAGTTATCAACGCACAGCCGCC
CGCCCGCCGTCGCTGTCGCGGCCTTTCCACCACCTCCCTCCCTCTCCTTACTCTACTACCCCAGTGGGCGCCGTCGATCGGCGTTCCCAAAGCTGCAAAA
CCAGCCGGGGTTTGTCCGTTCCCAACCCCGGAGGGTACGGTAGCTGTTACATGTCACTCCACGGCCGACCCCAACTAAATCAGACGGTGGAATAACAGTT
AATTAATCCGGATTTCACGTCACCGAATACGTGATCAAGAACGGTCTAGATTGGCAGCTCTTGGCGGTTGGCACAAGGGGGTTAGGTTGAGTGCACTTCT
CTGCTTCTGTTCTGTGTTGTGAATTGATCAACTAGAGGCTCCTGTTTCTTACCGTGTCTGTAAGCAAGGGAGACTGAGGTGTTTCGGTTCTGTGCAGATA
TGATCATGAAATCAATCTGTGTTTATGTTACAGCGTACTGTAGTACTGCACACGAATCAATCTCCAAGGCTGTGTTTAGATCTAAAGTTTGGATCCAAAC
TTTGGTTCTTTTTCATCACATCAACCTGTCATACACACACAACTTTTCAGTCACATCATCTTCAATTTCAACCAAAATTCAAACTTTACGCTGAACTAAA
CACAATCCAAGTATGGTCGAATATGGTCTACAATATATGACTGTCAAAGAACAAAGTGTAAAAGATACAGGTACAGTTCCAGTGTTACAAAGAACCAAGG
AAGAGCTAGACCTATATCTGTATGACTGTATGTATGGCTATGTATCACTCGCTTGCTCTGTACAAAAGCAGGAACAAATTAAACAATAGCGGCACAAAAC
GAATCAACGAATAGTGTGTTTCGACTGAATTTCACTCCCTAGACAAAAACTCTCTGACGGATCGGATCCATGCAGCTGCTGAATTACGCGGTGAGAAGCC
GGGGCTTCTTGAAGGCGAGGGGGCTCTGGACCTCCTCCTCCTCGTCCCACATCTTCTTGCCCTTGGAGCACGGCCGCCACACGAACTCCGGCACGGCCGG
GAGGTTGAGGTCGAACGCCCGGGTGGCGGACTGGCCGTTGCCGGAGCTTCCCACCTCGGACTCGGCGGCCACCGTGGCCAGGAGCTCGGTTGAAGATGCG
CCGGCGCCGGCGCCTACGCCACCGTCGTAGTGCTTCCTCTTGTGCCCGCCGAGCGCCTGCCCGGTGGGGAACTCCTTCTGGCAGATGGAACACCTGTGGA
CTCTGTTGGTCATGCCGTCGGAGGACGCGGCGGTGGATGACGTGGCTGGCTCGCGGTCCTCGGCGGAAGGCAGCAAGGCGGCGACGGGGGCGGGAGCCAA
GACGGGAGCTGCGGGCGGAGTCGGCAGCTTGACCCGGTGGCTCGTCTTGTGGCCGCCGAGCGCCTGGTAGGAGCTGAAGGACTTGCCGCAGACGGAGCAC
TTGAACTCCGCACCTGCCGGCGGGGGCGCCGAAGCCGAGAGCGGAGGCGGCGCCTGGACGCGGTGCGCCGAGGGCGAGCATGAGGAGGCAGAGCGCGAGG
TTCTCCTCCTCCGATCGCTGGCGGCGCGACCGCTTCCGCTTCGCCCACCCCTGCGGCAGGTGTCCGCCCTCCTCCCCGCTCGTGGCGCTGCTGCTCGTCA
CGACCGTCGCCTCCTCCACCTCGTGCTGCTGCTGCTCCTCCTTGAGCACCGCGGCGTGGAGCGCTTCCATGGACGACGCGCTCGACATGCTTCCACCGCA
ATTCACAAAAGCAGCAAGCAGATCGACGACTTGTTATATCCGCTAGCTAAGCTTCGCTCGCTCGCCTCAAGCTAGTGTGGCAGCTGGCTGGTTGCTGTGT
GGTGTGGTGTGGTGTGCGGAGTGGAGGGAGTGAGATGTGAGGTAGTTTTAAAGCAGTGGGGAGGGGTGAGGCGCGAGCGAGAGTGTGCGGAGGAGGAGAG
AAGAGAAGACGTGGGAAGTTGCGTCGTAGGTGGGGGCAAGGCAAGCGAGGTGGTTGCGGCGTGGGCGCGCACGCGGCGGGGCGCGAGAGGGTGACGGGTG
GGGGCGTGTCGTCGTGGGGACGGGGTGGCAGCGACCGTGAGACCGGTGGAGTGGCGGCGAAGGAGTGAGGCGGTTGGG