Detailed information on CNT30101056


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553095Oryza rufipogonOryza glaberrima84.8193.9798.66374reverse complement
CNT30575942Oryza rufipogonOryza barthii95.9262.0299.76423forward

Expression of CNT30101056

Peptides detected in this lncRNA

>peptide 1 (37 aa)
LKPKPAVQYNITRVSDQSTAKGSYKSNAISSPKDPQI*

>peptide 2 (91 aa)
MAPSFQTRYVVPNMTTVMSVKEAAMTITSVPNGSASNVHPSLGSRDDRFFPAFPSVSRSASSTRLPNSGFFPAAPAAADAAEALPFGDEPPG

Sequence

>CNT30101056
CTTAAAACCAAAGCCGGCAGTTCAGTACAATATCACACGAGTATCTGATCAAAGCACCGCAAAAGGCAGCTACAAATCCAACGCGATTTCATCACCCAAA
GACCCACAAATCTAGCGAGCTCATTGTGTGAGTGATAGTACGTAGCCTAGAACTCGTTGAAGTGAATGGCGCCGAGCTTCCAGACGAGGTACGTGGTGCC
GAACATGACGACGGTGATGAGCGTGAAGGAGGCGGCGATGACGATCACGTCGGTGCCGAACGGCAGCGCCTCGAACGTCCACCCTTCCTTGGGCAGCCGC
GACGACCGCTTCTTCCCGGCCTTCCCGTCCGTCTCCCGGAGCGCGTCCAGCACCCGGCTCCCGAACTCCGGCTTCTTCCCTGCCGCCCCAGCCGCCGCCG
ACGCCGCCGAGGCCTTGCCCTTCGGAGACGAGCCCCCCGGC