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Detailed information on CNT30101055


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003442, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692489Oryza rufipogonOryza sativa93.67100.3399.67903forward
CNT30595987Oryza rufipogonOryza meridionalis10079.0297.1964forward
CNT30105059Oryza rufipogonOryza longistaminata96.78100.2197.53933forward
CNT30575926Oryza rufipogonOryza barthii84.4497.1499.02814forward
CNT30116356Oryza rufipogonOryza nivara71.2764.3998.4687forward
CNT30603889Oryza rufipogonOryza punctata97.183.8793.8936forward
CNT30550796Oryza rufipogonOryza brachyantha59.5445.283.8574forward

Expression of CNT30101055

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MNGRSNLQWRIMDHRIGLSSRAIYDYMHSIIDAIMQVCN*

>peptide 2 (38 aa)
PAVCPHLQKGLETLRFHAIKRNSVTPPCHFFATYSIPS*

>peptide 3 (29 aa)
MMVLIIQFLLLILKVLCQDKKSLCKPSKP*

>peptide 4 (50 aa)
MKTIIIKRIEDSIFFFLRICRENYSDSGTGSSSHLKLNTTLYQEQMNNEW*

Sequence

>CNT30101055
GACCAGCCGTTTGTCCTCATTTGCAGAAAGGGTTAGAAACCCTTAGATTTCATGCCATCAAGCGTAACAGTGTAACCCCACCATGTCATTTCTTTGCTAC
TTATAGCATCCCAAGTTGATGATCCATTTCATGTTTTCTCTCCTTTTTCAGATGCATACTATGATGTCCAATGTGGGTGTCTGAACTGAAATCTGAACTC
TGAACTCTGAAGGCTGTTGTTTCCATCAGGGTGCATTGGTTCAGCAGAGATCGGTGATCTATGTTTTCATATTTGGTCACGTTCTACCGGTCTTTTTCGA
TGGAAATGAAGGTAATTGGAGGAGTTCTATCTGTTTGATGGAATTCAGAACCAAAATCCGAATTCCACAAAATGGCTAGAGGAAAATTTTTAGGGCTATT
TGCAATTCCACAACCATAAGCATGGCCAACTGGTAGTTCTCCAAGTAAAAGAAGTTAGGAGCTGGTTATGATGGTACTAATTATTCAGTTTCTTCTATTG
ATCCTGAAAGTTCTATGCCAGGATAAGAAAAGCTTGTGCAAACCCTCCAAGCCATGAAAACAATTATCATCAAGAGAATTGAAGATTCTATTTTTTTTTT
TCTTAGGATCTGCAGGGAAAATTATTCAGATAGTGGAACAGGTTCAAGTAGCCATTTGAAACTCAACACAACTTTATATCAAGAACAAATGAACAATGAA
TGGTAGATCCAATCTTCAATGGAGAATCATGGACCACCGAATTGGGCTATCTTCCCGAGCTATCTACGACTACATGCATAGTATAATAGATGCAATCATG
CAAGTGTGCAACTAGTAGTTTTTTTTTTTTCTGAAGGAGATGAGATTAGGTATAGCATGTAATGGTCCTGGTGTATAATGCCATGGCACACTCAACTTGC
ATTTAAACAATGCTAGTCCCTGCAGACCTTGCCAAGTTCTCTGCTCATCCTCATTAGGTAATTT