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Detailed information on CNT30101010


BLAST search results

BLAST vs Swiss-Prot:
sp|Q589B0|RR16_SILLA, E-value = 3e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30662247Oryza rufipogonTriticum dicoccoides23.2249.5695.88170forward
CNT30229322Oryza rufipogonAnanas comosus13.5241.9592.9399reverse complement

Expression of CNT30101010

Peptides detected in this lncRNA

>peptide 1 (77 aa)
GAQEDDRRRRRLHRSLDRFLVGRVLVLMGVALESGIAWRVGGDFGHPSFLCPSPLCPFRHASRTGSGVSSGERVSNA*

>peptide 2 (34 aa)
MHASHTNLSNSIKKEKFSKRKKVNEFSRKVLYRI*

Sequence

>CNT30101010
CCGGTGCCCAGGAAGATGACCGACGACGACGACGACTCCATCGATCGCTGGATCGATTCTTGGTTGGTCGTGTACTTGTGTTGATGGGGGTGGCTTTGGA
GAGTGGAATTGCGTGGAGAGTTGGGGGAGATTTTGGGCATCCCTCTTTCCTATGTCCTTCCCCCCTTTGCCCTTTCAGACATGCAAGTCGAACGGGAAGT
GGTGTTTCCAGTGGCGAACGGGTGAGTAACGCGTAAGAACCTACCCTTGGGAGGGAAACAACAAATGGAAACGGTTGCTAATACCCCGTAGGCTGAGGAG
CAAAAGGAGAAATCCGCCCAAGGAGGGGCTCGCGTCTGATTAGCTAGTACTTTTCGAAGATCTCTTCCTTCTCTTCGAGATCGAACATCAATTGCAACGA
TTCGATAGACAGCTTATTGGGATAGATGTAGATAAACAAAGCCCCCCTAAGTTCCAAACATTTGTTAAAAGAGAAAGAGACTCCCCAAGGCAAAAGTACG
ATAAATACAAGATATAGGAAAGAAGGCAATGCTTTCTCTTTTTTTCATTTTTGATATGTAAATTGAGTTGTTAATGAATCCGCTTTATTCGCTGGCGCTT
AGTGTTTAAACTAAAAATGCATGCATCTCACACTAACTTATCAAATTCAATAAAAAAAGAGAAATTTTCAAAAAGAAAGAAAGTGAATGAATTTAGTAGA
AAAGTACTGTATCGGATTTGAACCACTGACTC