Detailed information on CNT30100962


BLAST search results

BLAST vs Swiss-Prot:
sp|Q84R49|GUN10_ORYSJ, E-value = 9e-63

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552890Oryza rufipogonOryza glaberrima57.0296.88100341forward
CNT30721322Oryza rufipogonTriticum spelta37.9647.4988.99227forward
CNT30361099Oryza rufipogonSorghum bicolor23.4116.8590140forward
CNT30595853Oryza rufipogonOryza meridionalis59.3643.599.44355forward
CNT30116017Oryza rufipogonOryza nivara55.1899.1100330forward

Expression of CNT30100962

Peptides detected in this lncRNA

>peptide 1 (30 aa)
DHYHSIAAVLKYTINHPSLCKSFLVNSCTF*

>peptide 2 (70 aa)
MLQHALPSPELLQPIENCLIRAIGAVSPTLQPTELVQGLCATHELVRVSLAVLEHYGSCSKGSSHFGSKI*

Sequence

>CNT30100962
TGGATCACTATCACAGTATCGCTGCAGTATTGAAGTATACCATTAACCACCCTTCTCTATGCAAATCATTTTTGGTTAATTCCTGCACCTTCTAAAACAC
TTGTATATTTTCTCATTCAGATTACCTTATCCTTCTTCTGTCATTTTACACTAACTGCAATGTGGTTCTAGCTAACCAGTGCACTGAGTACAGAGGTGTG
AAGTATGCTAACCTGAGCTCCTGGAAGCTTGTCATCCCAGGTAAAAACTCCATAATTCGGACTATCGAGCCAGTATGCTCCAGCATGCTTTGCCATCCCC
GGAGCTGTTGCAACCGATAGAAAATTGCTTGATCAGAGCCATTGGGGCTGTATCTCCCACGCTGCAGCCTACCGAACTTGTACAGGGCCTTTGCGCCACG
CACGAGCTTGTCAGAGTAAGTCTTGCTGTCCTTGAACACTATGGAAGCTGCAGCAAGGGCAGCAGCCATTTCGGAAGCAAGATCTGAGCAAGAGTGGCAC
TCAGTGACAGGTCTGGGGTAATCGATATCCTCTGGCCTCATCCAGCAGTAGTGGTCATTAGGTTGGGCACCACCTTTTGAGGTGTCACCTACACCCAC