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Detailed information on CNT30100956


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39176|ERLI1_ARATH, E-value = 7e-21

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678378Oryza rufipogonSetaria viridis12.5522.5787.3795forward

Expression of CNT30100956

Peptides detected in this lncRNA

>peptide 1 (86 aa)
MGRLRLMPRMLARRAVQRPWMRLQHGCRGGVPSCTFISPFSTFAHTPSFSVSIGHLPPPPPPPLPPPPPPPLPPPPEPPPPLPPPPE

>peptide 2 (45 aa)
MQKRRDAVRTDAYTMRSIEYKLINQLCRYTYTSRRMKHALITSWN*

Sequence

>CNT30100956
GAGAGAGAGAGGAACAATTGAACAAGACAGTACGTAGCTAGTACAAACGATTGGGACCGATGGATCGAACAAGAGCTAGCTAGTACAGTATGTGTAGAAT
TAACAGGCATGCAGAAAAGACGAGATGCAGTACGTACTGATGCATATACGATGAGATCCATCGAGTACAAATTAATTAATCAATTATGCAGATACACATA
TACAAGTAGACGAATGAAGCATGCTTTAATTACGTCGTGGAACTGAATCATATGCATGCATATATATCTCATTAATTTACGGGATGAAGGAGGAAATTAA
GGCACGCAGATACATATGATGATTTGAACAAGGAACAAACTAGACATAGATAGATATATAGTTGTACGTGGCCTGGTGGTCGTTCTTGTGTGTAGCAAGC
AGTGAAGTAGAATGGAGCAGCAGCTATATTAGTTGCTGCACTGGAAGCCGGAGGGGACGGAGCGGCCGCAGTAGTTGACGAGGAGGCTGAGGTTGATGGG
GAGGTTGAGGTTGATGCCAAGGATGTTGGCGCGGAGGGCGGTGCAGAGGCCCTGGATGAGGCTGCAACACGGCTGCCGCGGCGGCGTCCCCAGCTGCACG
TTTATCAGCCCATTCAGCACGTTCGCGCACACCCCCAGCTTCAGCGTGTCGATCGGGCATCTTCCTCCTCCCCCGCCGCCGCCGCTTCCTCCTCCTCCGC
CGCCTCCGCTTCCTCCACCGCCTGAACCTCCGCCGCCGCTTCCTCCTCCACCTGAAC