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Detailed information on CNT30100946


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30108884Oryza rufipogonOryza longistaminata56.7799.1699.79474forward
CNT30575679Oryza rufipogonOryza barthii62.8793.5898.86525forward
CNT30603650Oryza rufipogonOryza punctata19.435.9288.27162forward

Expression of CNT30100946

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MIIALHPEWDRSRSARIGLCSRRHHGALPVSIACRSLLSHRPAVNTKI*

>peptide 2 (92 aa)
PGPGKIIDPRGVEETLAHWRKLSTHRGKQRRWRGCGLRVDGATATRHSPRRRRSPLRRPSPPLATFSPIACPPIRVGEDQPPPSWDPIPLAW*

>peptide 3 (36 aa)
PVREKSSTQEAWKKPSRTGGNYQRIGESSGGGAGAD*

Sequence

>CNT30100946
CCCCGGTCCGGGAAAAATCATCGACCCAAGAGGCGTGGAAGAAACCCTCGCGCACTGGAGGAAACTATCAACGCATAGGGGAAAGCAGCGGCGGTGGCGC
GGGTGCGGATTGAGAGTCGACGGCGCGACGGCGACGCGGCACTCTCCCCGGAGGCGGCGCTCTCCCCTCCGCCGACCGTCCCCTCCGCTGGCCACCTTCT
CACCAATTGCATGTCCACCAATTAGAGTTGGAGAAGACCAGCCTCCTCCTTCTTGGGACCCTATACCCTTGGCCTGGTAGTACTGGATTGATTTTAAGAC
CAATTTTCAGTACTGGAGATGGGAACACTGGAGCTGGGTGACTGAAGCGCATGGTGGCATTAGTGCTAAGCTTAAACACTTGCATTCAATTTGTAGTTTA
GCTCTTAGCTGGCTACTTCTATTTATTCTAAGAAAAACAACTGAATTGTACCCATTTTGATTAATCTGTGACCTTTTCATGTCCTTCAAATTTCATCATC
TTCTGCATTTGTTGATCTAATACGGCCCAGCCACCTGTTTTTTTTTTCATTCATAGTCTGCATGATCATCGCGCTTCACCCTGAGTGGGATCGATCCCGA
TCTGCCAGGATAGGCCTCTGTTCTCGTCGTCATCATGGTGCTTTGCCCGTGAGCATCGCTTGTCGTTCTTTGTTGAGTCATCGTCCAGCTGTTAACACCA
AAATTTGATACGGTTGTTTAGAGGATTCGGTTAAGTAAAGAAGTCAATCAACCAATCAGGACTTATATCTTTTCTTTTATCTTTAGGAAACCTATATCTT
GTCCGATTAGGACTAATATCAACCCAAGGGTATAA