CANTATAdb - search

Detailed information on CNT30100935

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30692067	Oryza rufipogon	Oryza sativa	80.35	74.16	98.27	462	forward
CNT30369951	Oryza rufipogon	Oryza glumipatula	100	86.08	99.48	575	forward
CNT30105375	Oryza rufipogon	Oryza longistaminata	94.09	80.87	97.04	541	forward
CNT30575676	Oryza rufipogon	Oryza barthii	100	52.51	99.48	575	forward

Expression of CNT30100935

Peptides detected in this lncRNA

>peptide 1 (50 aa)
SCCPMRLFCPGRLINPRTTQRDDAGDEVSHPSSPIKSCFSCSLLAPSHTT*

Sequence

>CNT30100935
TCCTGCTGTCCCATGCGATTATTTTGTCCCGGTCGTTTGATCAATCCAAGGACAACTCAACGAGATGATGCTGGTGATGAGGTGAGTCATCCTTCCTCTC
CTATTAAAAGCTGTTTTTCTTGCTCCCTCCTCGCTCCCTCTCACACGACATGAGCAGCCCTAGATCGTCCGGGGTTGGAGCAACTGTTGTGAGATCAAAT
CTTGATGGTCATTATTAGCTGAAAAGGATTGGATTTTTACCGCAGAGACAGTATGTGAGCTGTGTTTCTCAGTGCCTCCCATGTTCTTGCACCAACCAAG
CTAGAACTTGGAAAGGAACACCACCATCACCAATTTGCAAGAGAAGGTTCTCTCCCTTGTATTATAACCACAACTATATTGATTCGAGATTAAAGAGAAG
GGCACAGTGAGGATACTGGCATTTGGAGGCTTGTTGAATCCCAGGTGCGTGTGCCACCTCTCCCGAAAGGCCAAAAAAAAACCACTGCTGCGAGTGCGAG
TGTGCAACTTTCCTGCAAGAAACAGTGAGCCGAACACACCGGCTCTGTTCTTGGCTAATTAAACCCCAATTGCGG