Detailed information on CNT30100934


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002486, E-value = 2e-57

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30689988Oryza rufipogonOryza sativa11.3128.9487.43191reverse complement
CNT30107677Oryza rufipogonOryza longistaminata11.3160.4487.43191reverse complement
CNT30576476Oryza rufipogonOryza barthii10.7836.1888.46182forward
CNT30116255Oryza rufipogonOryza nivara3.1422.9410053reverse complement

Expression of CNT30100934

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MCIEKKHCGVQCQKRLRLCSTNTLCSLPTLLHVYSPGVSTSRSKSVFLCANSVAGRRACSCGCGRC*

>peptide 2 (51 aa)
MDGERRRRAARRETAGEKWDPATAARTRKLRRSAEHREGGAAVLGRRGERD*

>peptide 3 (72 aa)
MIVVSCHRRVTRRSSLRGVTARYCVGLGSEERSDAAAAACGGERKMVRATGDGDDDDAAPGEVRRWSRNSVC*

>peptide 4 (50 aa)
MLSQYWQRRACRERAAGGVEHRRRQTSALPAERSGGKRTAGAGPRXARGA*

>peptide 5 (29 aa)
MRLRLHAAASARWFALPETETTTTPRPVR*

Sequence

>CNT30100934
AAAAAGTACATCGAAGGTCCCTCGATTTGTCATTGAGTTACAAAATCATCCCCAAACCGCAAAACAGATATCCGGCGTCCCTTAACTAATCAAAACCGGT
CACAATAGGTTCTTCGGTGGTTTTGACCCCGGTTTTATCCTACGTGGCGGCTAAGTCAGCGTGGGACCCACGTGGGCCCCACATGTCAGGCTGAGTATCT
CTCCCCTTCTCTTCCTCGATTCCTCGTCTCTCTCTCTCTCTCTCTCTCTGCCTGTAGACCTGTCGGCGGGGCGGGGCGAGGCGAGGCGGGAGAGGAGGGC
GGCGCCACGACGGCGGTCGGCGGCGGCGGCGGCGAAGAAGACGTGTAAGCCGCGGCGGCGTTGGTGGCAGAGGAGGACGCGATAGCAACACTCGACCTGG
TTTTGCTCTCGGGCCTCGCGAAGGCGAAGAAGCCTCCTCGACCTTAACGCTCGTCGTGAAGACGACGTGCTTCAGGTGCGCCCTGTTGTTGGATGCGTCC
GCTGGAGTGATGATCGTCGTCTCGTGCCACCGCCGTGTCACACGCAGGAGCTCGCTGCGCGGCGTGACGGCGAGGTACTGTGTGGGTTTGGGATCAGAGG
AGAGGAGTGATGCGGCTGCGGCTGCATGCGGCGGCGAGCGCAAGATGGTTCGCGCTACCGGAGACGGAGACGACGACGACGCCGCGCCCGGTGAGGTGAG
AAGATGGAGCCGCAATAGCGTATGTTAGAAATAATCTAGACTTAGTATTTTGCTTTTGCATGTTTTCTTATGTATGCATAACTTGGGCTGCTAGCTGGTC
TATTTAAGCATGTACTTTGAGGTTGATTATGTGCATTGAAAAAAAACACTGCGGTGTGCAGTGCCAGAAAAGGTTGCGGTTGTGCAGCACAAATACCTTG
TGTTCTTTGCCTACTCTCCTGCATGTGTATTCACCAGGTGTGAGTACGTCTCGGTCTAAGAGTGTTTTCTTGTGTGCTAACAGCGTAGCAGGTAGAAGAG
CCTGTTCTTGTGGTTGTGGACGATGCTGAGCCAGTATTGGCAGCGACGAGCGTGCAGAGAGCGCGCGGCCGGCGGAGTGGAGCACCGGCGGCGGCAGACG
AGCGCGCTGCCAGCGGAGCGGAGCGGCGGCAAGCGAACGGCCGGAGCAGGCCCGCGAGCNGCGCGAGGAGCGTGACGGCGGCCATGGACGGGGAGAGGCG
GAGGCGGGCCGCGAGGCGGGAGACCGCGGGGGAGAAGTGGGACCCTGCGACGGCGGCGAGGACGCGGAAGTTGAGGAGGAGCGCCGAGCACCGGGAGGGA
GGCGCGGCGGTCCTGGGCAGAAGAGGGGAAAGAGATTAAGAGAGAGGGTGGTGACGTGGACACCGGGACATGGGTCCATGTGGGTCCCACGCTGACTCAG
CTGCCACGTAGGATAAAATCGGGGCCAAAACCACCGAAGGACCTGCTGTGACTAGTTTTGATTAGTTAAGGGACGCCAGATACCTGGTTTTGTAGTTTAG
GGACGATTTTGTAACTCGATGACAAGTTGAGGGACCTTCGGTGTACTTTTTCCTCAGATATATCTGGAGCACAATCCGAGCCTGCTAGCACAGCTGATTA
AGATAGTTAGTATATTAGTTTATTTGAATTAATCTACTATAATTTCGTACACATATTCGGCGGGTATGTAGTATTTTATATATGCTTAT