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Detailed information on CNT30100908


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691897Oryza rufipogonOryza sativa43.8140.84100301forward
CNT30677870Oryza rufipogonSetaria viridis11.531.2391.1479forward

Expression of CNT30100908

Peptides detected in this lncRNA

>peptide 1 (37 aa)
LKPKPAVQYNITRVSDQSTAKGSYKSNAISSPKDPQI*

>peptide 2 (88 aa)
MAPSFQTRYVVPNMTTVMSVKEAAMTITSVPNGSASNVHPSLGRPRLLSSNMLLGASGSRRCRRRLLEVMPRAEGELRVWRGRSGDAS*

Sequence

>CNT30100908
CTTAAAACCAAAGCCGGCAGTTCAGTACAATATCACACGAGTATCTGATCAAAGCACCGCAAAAGGCAGCTACAAATCCAACGCGATTTCATCACCCAAA
GACCCACAAATCTAGCGAGCTCATTGTGTGAGTGATAGTACGTAGCCTAGAACTCGTTGAAGTGAATGGCGCCGAGCTTCCAGACGAGGTACGTGGTGCC
GAACATGACGACGGTGATGAGCGTGAAGGAGGCGGCGATGACGATCACGTCGGTGCCGAACGGCAGCGCCTCGAACGTCCACCCTTCCTTGGGCAGGCCG
CGCTTGCTGTCGTCGAACATGTTGCTCGGCGCCTCGGGCAGCCGCCGCTGTCGTCGCCGCCTTCTGGAAGTGATGCCTCGAGCAGAAGGTGAGCTGCGTG
TATGGCGAGGAAGATCTGGTGACGCCTCCTAGCTGCACATCCAGTTGCATCGGCAAGCCAAGATTAATTAGCATGCTTAAACAGCTAACCAATCACAACT
CTAAAGATGGTCGAAACTCGAAACAGTTTCACTGAATTATGCACGTAACCCTGTAACGAACTACAGATACATCAGTTTTTGCAGTCCCACTTCTGTAATT
AGAACCACATGATTCCTATCTAGCAAAGTGGCAACAGCATGGTTGCGCAAGAAGCATCAAGAAAGAAGGGGAGAGGGAAGAAACCAT