Detailed information on CNT30100889


BLAST search results

BLAST vs Swiss-Prot:
sp|P27788|FER3_MAIZE, E-value = 1e-58

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692005Oryza rufipogonOryza sativa45.1346.999.56227forward
CNT30448124Oryza rufipogonSaccharum spontaneum45.1329.4486.78227forward
CNT30137412Oryza rufipogonLolium perenne24.2528.8482.79122forward
CNT302216Oryza rufipogonZea mays44.3380.2286.55223forward
CNT30361595Oryza rufipogonSorghum bicolor30.8229.0387.74155forward
CNT30369772Oryza rufipogonOryza glumipatula57.6547.8599.31290forward

Expression of CNT30100889

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MDLADDIESFLPLGGKFSRKSTLVKVSFLVSMDDAVGLRVGDTCQHIAFFLLRIIKE*

>peptide 2 (31 aa)
MSAHSLLPAAHHQGMIHPTGRRSQPRSYRHR*

Sequence

>CNT30100889
CCCATCTCTTAGCCCCAACCTTGAAACGCATACTAACGAAAGACAACATACAAAACCACCATCAAAGTCCGATTTAATTGAGAGTTGAGACACAACTGGT
ACACACGATGGACCTTGCCGACGACATTGAGAGTTTTTTGCCTCTTGGCGGAAAATTTTCAAGAAAAAGCACCTTAGTAAAGGTCTCCTTCCTTGTGAGT
ATGGATGACGCAGTCGGACTTAGGGTAGGAGACACATGTCAGCACATAGCCTTCTTCCTGCTGCGCATCATCAAGGAATGATCCATCCGACTGGTCGACG
GAGCCAGCCTCGATCTTACCGGCACAGGTAGAGCATGCTCCAGCACGGCATGAGTAGGGAAGCTCCACTCCAGCGGTCTCGGCGGCATCAAGGATGTAGG
TAGCCATTGCCGAGACGTCAAGCTTCTTGGAGGAGGCCTTCAGGCTTGGAAACTGCATGCCTTGGCTGAAGAAGCTTAGAGATGCCAGGCTCTTGACCGC
CGC