Detailed information on CNT30100848


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677963Oryza rufipogonSetaria viridis17.229.8287.6965forward
CNT30394048Oryza rufipogonTriticum turgidum61.1129.5883.98231forward
CNT30246978Oryza rufipogonAvena sativa20.6317.4189.7478forward
CNT30666056Oryza rufipogonTriticum dicoccoides61.3824.4279.31232forward
CNT30457028Oryza rufipogonSaccharum spontaneum25.9319.7285.7198forward
CNT30683236Oryza rufipogonTriticum urartu25.9324.0889.898forward
CNT30344056Oryza rufipogonEragrostis tef60.3224.5487.28228forward
CNT30361298Oryza rufipogonSorghum bicolor32.835.4386.29124forward

Expression of CNT30100848

Peptides detected in this lncRNA

>peptide 1 (94 aa)
MDLWTRYIFRLRSGAQISDRDAVGDALGGDAGGGAGDVGGVGVKQHVWELGWAIAVLEPRVAVHAHHLPFDLHQPVAEPPERLQRPGVRRPRRRV

>peptide 2 (49 aa)
MYGNSAGPLRFLSPASPFMPTTFPSISTSRSLNRRNASSALASDVHAGVS

>peptide 3 (59 aa)
GNATFIHIYSPQQFARVSDHQIELCVRRCGNGLMDTVHIQIKIGSSDFRSRCCWGCPWR*

Sequence

>CNT30100848
GGGAAATGCGACTTTTATCCATATATATTCTCCTCAACAGTTTGCTCGAGTGAGTGATCACCAGATAGAACTCTGCGTTCGTAGGTGTGGAAATGGACTT
ATGGACACGGTACATATTCAGATTAAGATCGGGAGCTCAGATTTCAGATCGAGATGCTGTTGGGGATGCCCTTGGCGGTGATGCCGGCGGCGGCGCCGGT
GACGTCGGAGGTGTTGGGGTAAAGCAGCATGTATGGGAACTCGGCTGGGCCATTGCGGTTCTTGAGCCCCGCGTCGCCGTTCATGCCCACCACCTTCCCT
TCGATCTCCACCAGCCGGTCGCTGAACCGCCGGAACGCCTCCAGCGCCCTGGCGTCCGACGTCCACGCCGGCGTGTCG