Detailed information on CNT30100829


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692514Oryza rufipogonOryza sativa24.3965.0799.33149forward

Expression of CNT30100829

Peptides detected in this lncRNA

>peptide 1 (89 aa)
MAASVDVIVVVCVLAEELHGVLQALALGLANAHRHGRPQRVRLRLNAGALEHPRAVHHDAVDAGGLLDEHQAEPGDEHAADGPRRVEQQL

>peptide 2 (55 aa)
MDAPSEFVFDLMPARSNTRGLYITTQSTPVACWMNIRPSPATSMRRTGLVGLSSSS

>peptide 3 (50 aa)
KDPQIRAKLRNRNGDCDLFTWIRPCSVEYHTIFSPVKQLNVPTCWLRPTS*

>peptide 4 (40 aa)
MSKLFSIGERIGFDHTRTRDGRVLFSAERSAQWTSCAHGG*

>peptide 5 (35 aa)
KTHRSVPSCVTATVTATFLRGFVPAVWNITRSFPP*

Sequence

>CNT30100829
AAAAGACCCACAGATCCGTGCCAAGCTGCGTAACCGCAACGGTGACTGCGACCTTTTTACGTGGATTCGTCCCTGCAGTGTGGAATATCACACGATCTTT
TCCCCCGTAAAGCAGCTCAATGTCCCTACATGTTGGCTAAGGCCAACAAGCTGATGTGCACGAGATCCAAAAGTCTAGCAATCTAACCTAAGTGGCCAGA
ATCTGAAGATTCACAAAGCAACACACGATGTCGAAGCTTTTTTCTATCGGAGAACGAATAGGCTTCGACCACACTCGGACTCGGGACGGACGTGTTCTGT
TCAGTGCTGAGCGCTCAGCTCAGTGGACCTCTTGCGCTCATGGCGGCTAGTGTCGACGTCATCGTCGTCGTCTGTGTCCTTGCCGAAGAGCTTCACGGTG
TCCTCCAGGCTCTTGCCCTTGGTCTTGCAAACGCCCACCGCCATGGACGCCCCCAGCGAGTTCGTCTTCGACTTAATGCCGGCGCGCTCGAACACCCGCG
GGCTGTACATCACGACGCAGTCGACGCCGGTGGCTTGCTGGATGAACATCAGGCCGAGCCCGGCGACGAGCATGCGGCGGACGGGCCTCGTCGGGTTGAG
CAGCAGCTCCT