Detailed information on CNT30100813


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002876, E-value = 2e-122

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520302Oryza rufipogonSetaria italica95.0475.1686.67345reverse complement
CNT30577476Oryza rufipogonOryza barthii100.2832.8295.6364reverse complement
CNT30496834Oryza rufipogonDigitaria exilis20.392.2186.4974reverse complement

Expression of CNT30100813

Peptides detected in this lncRNA

>peptide 1 (47 aa)
YTSHAHHACVTATHAPVKPRESALIPFCNVPPSPRPGPLTSDSFHRS*

>peptide 2 (49 aa)
MSFLHTLSSLVCTREEFPGRSPIPNCSRPSTLNPGVLWRLTSGKEVATC*

Sequence

>CNT30100813
TCTACACCAGCCATGCGCACCATGCCTGCGTAACTGCGACACACGCGCCCGTGAAACCGCGAGAGTCGGCTCTGATACCATTTTGTAACGTCCCGCCTTC
CCCCAGGCCGGGCCCGCTTACATCTGATAGCTTTCATAGGTCATAGACTCCTCACAGGGCAACACATGTCTTTTCTGCACACTTTGTCCTCACTCGTGTG
CACCCGGGAAGAATTTCCCGGTCGGTCACCCATCCCAAATTGCTCCAGGCCAAGCACGCTTAACCCTGGAGTTCTTTGGAGATTGACTTCCGGAAAAGAA
GTTGCAACTTGTTGATATGAGTATTCTATTAATCCTATTAAACCCTAGGCCGGGATGTTACAA