CANTATAdb - search

Detailed information on CNT30100809

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000219, E-value = 5e-50

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30692533	Oryza rufipogon	Oryza sativa	54.7	50	100	349	forward
CNT30575848	Oryza rufipogon	Oryza barthii	53.29	37.82	99.41	340	forward

Expression of CNT30100809

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MYLPWRGSHLAIMEDGSKALLVISATESCSW*

>peptide 2 (45 aa)
MVGLLRRDHWSVGRKHEVDPWVGHKVGLELIDIHVQSTIKPQGGGQ

>peptide 3 (44 aa)
MRENTSTTLVELEIMHTALCSRPCTCRGEGRTWPSWRMARRHCW*

Sequence

>CNT30100809
CCACAGTCGAGAGTAAACCGTAATCAACACAAGAAACAAACATAAAATTGAACAAACGCGCATATTATAAGTGACGAAGCGGTCTCACATAAAACAGGGC
ACACAGGTTACAACAACGAGGGTTGTAAGCCCATTAAGCCCCAAACATCAGATCACCACAAGCAAATGTCTCGAAGACACACGCACACGGCAACAGGATA
ACTCCACACTGGCAGATCATGGGATAGCAGCAGTTATCAATCAGGCCTTGACACACAGAACATCAAGCCCCCAGACGACGACGACTCCTCTAGTACTCGT
CACCATCATCGCCATCCTCATTCTCGTCGAACTTGTGGTCGATGCGGGAGAACACCTCCACGACGCTGGTGGAGTTGGAGATCATGCACACGGCCCTCTG
CAGCAGGCCATGTACTTGCCGTGGCGAGGGTCGCACTTGGCCATCATGGAGGATGGCTCGAAGGCACTGTTGGTGATCTCGGCAACAGAGAGTTGCTCAT
GGTAGGCCTTCTCCGCAGAGATCACTGGAGCGTAGGACGAAAGCATGAAGTGGATCCTTGGGTAGGGCACAAGGTTGGTCTGGAACTCATTGACATCCAC
GTTCAGAGCACCATCAAACCTCAGGGAGGCGGTCAGGG