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Detailed information on CNT30100804


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT001340, E-value = 2e-68

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30710098Oryza rufipogonGlycine max23.1659.2491.94186reverse complement
CNT3082954Oryza rufipogonBrassica juncea23.4115.9391.49188forward
CNT30609809Oryza rufipogonGossypium raimondii34.3764.9488.41276forward
CNT30623039Oryza rufipogonDaucus carota31.3896.1894.44252reverse complement

Expression of CNT30100804

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MSKCIGRGAFRLRGKQPRKRGSTKRKRECRLE*

>peptide 2 (54 aa)
MNGAKRSAEAVGCQNASVGERSALEGSNRESGGRRSGSENVGLSNENIGENPMP*

>peptide 3 (51 aa)
LKGVNANKKHPLGKLRSQGVFLIEGLPLVFLYYFLVQPGGLPRSSHPLKSA*

>peptide 4 (57 aa)
MDNRSIFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSTKGYLYPKPTQVGR*

Sequence

>CNT30100804
CTAAAAGGCGTGAATGCAAATAAAAAACATCCCCTGGGTAAGCTTCGCAGCCAGGGGGTCTTCTTAATAGAAGGGTTGCCATTAGTGTTTCTTTACTATT
TTTTAGTACAACCAGGAGGTTTGCCTAGAAGCAGCCACCCTTTAAAGAGTGCGTAATAGCTCACTGATCGAGCGCCCTTGCGCTGAAGATGAACGGGGCT
AAGCGATCTGCCGAAGCTGTGGGATGTCAAAATGCATCGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCAACCGCGAAAGCGGGGGTCGACGAAGCGGAA
GCGAGAATGTCGGCTTGAGTAACGAAAACATTGGTGAGAATCCAATGCCCTGAAAACCCAAGGTTTCCTCCACAAGGTTCGTCCACGGAGGGTGAGTCAG
GGCCTAAGATCAGGCCGAAAGGCGTAGTCGATGGACAACAGGTCAATATTCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTCAACAAAGGGGTACCTGTACCCGAAACCGACACAGGTGGGTAG
GTAGAGAATACCTAGGGGCGCGAGACAACTCTCTTTAAGGAACTCGGCAAAATAGCCCCGTAACTTCGAGAGAAGGGGTGTCCCCTCGCAAAAGGGGGTC
ACAGTGACCAGGCCCGGGCGATTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGTAAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTC
AAG