Detailed information on CNT30100801


BLAST search results

BLAST vs Swiss-Prot:
sp|A2XF66|H2B1_ORYSI, E-value = 1e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30518188Oryza rufipogonJuglans regia21.615.8988.57140forward
CNT303693Oryza rufipogonZea mays37.0469.5786.67240forward
CNT30681751Oryza rufipogonTriticum urartu60.1962.284.36390forward
CNT30619778Oryza rufipogonCajanus cajan21.452189.93139forward
CNT30360078Oryza rufipogonLactuca sativa20.2216.5486.26131forward
CNT30369782Oryza rufipogonOryza glumipatula91.0592.6296.27590forward
CNT30575811Oryza rufipogonOryza barthii53.710099.71348forward

Expression of CNT30100801

Peptides detected in this lncRNA

>peptide 1 (52 aa)
PNRNRKEKRKTQDANQPPTINNTRHVYYFKSKPPIMIKHNLQSRHKFATTAT*

>peptide 2 (29 aa)
MSLMKEFMIDMALEEIPMSGCTCFRTLKM*

Sequence

>CNT30100801
CCCCAAATCGCAATCGCAAAGAGAAAAGAAAAACACAAGATGCGAATCAGCCACCGACAATAAATAACACTCGACACGTCTATTACTTCAAATCCAAGCC
GCCCATTATGATCAAGCACAATTTACAAAGCAGGCACAAGTTTGCAACTACTGCCACCTAGCACACTGCACACACGAGGGGAAAGGGAAGGAGAGAAGCA
TGGCATCGAAACCCTAGAGAGACAGGCCTAGTTGCTGGTGAACTTGGTGACCGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCGAGCTCGCCGGGGAGG
ACGAGGCGGGCGGCCTCCTGCGCGAGCTTCTCGAAGATGTCGTTGATGAAGGAGTTCATGATCGACATGGCCTTGGAGGAGATTCCGATGTCCGGGTGCA
CCTGCTTCAGGACCTTGAAGATGTAGATCTTGTAGGTCTCGACGCTCTTCTTCGCCTTCTTCCTCCCCTTCTTGTCGCCGGCGCCGCCCTCCTTGGACGA
CGCCTTCGACGCCGGCAGCCGCTTCTCCGCCTTGGGCTTCTTCCCCGCCGGCGCCTTCTCCGCCGACTTCTCCTCGCCGGCTGCGGGCTTCTTCTCCGCC
GGCTTCTTCTCTGCCTTGGGCGCCATCGGAGCTGCCTCTCGAGGGATC