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Detailed information on CNT30100789


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692464Oryza rufipogonOryza sativa60.1633.15100305forward
CNT30106100Oryza rufipogonOryza longistaminata26.4325.5295.52134forward
CNT30116188Oryza rufipogonOryza nivara51.6812.7499.62262forward

Expression of CNT30100789

Peptides detected in this lncRNA

>peptide 1 (33 aa)
SPSLQPIRLGIIQCFHAKANDLAHGSWWPMSSS*

>peptide 2 (90 aa)
APRLSSRFGLELSNASMRRPMIWHMGAGGRCLRPNQTRCCCCCSSHMLLLCPTLTDILIAQRRPDHRTATDADCSCKMQVTRGLLVKVRV*

Sequence

>CNT30100789
GCTCCCCGTCTCTCCAGCCGATTCGGCTTGGAATTATCCAATGCTTCCATGCGAAGGCCAATGATTTGGCACATGGGAGCTGGTGGCCGATGTCTTCGTC
CTAACCAAACCAGATGCTGCTGCTGCTGCAGCTCCCACATGCTCCTGCTTTGCCCTACTCTGACTGACATTTTGATTGCCCAACGGCGGCCGGATCATCG
CACAGCCACAGATGCAGACTGCTCATGCAAGATGCAAGTGACTCGAGGTCTTTTGGTAAAGGTACGAGTATAAAAAAATGTACTTCATGACATTCAGCTG
TTGCGTTTTTTTACCTTTATTTTTTTCTTTTTGCCCAAATTTTGGTTGATACCTAACCTTGCCATAACTAAGTTTAGACTAGTTGAGGCATGGTGGCACA
AGTGTGACTTAGAAATAGTTGGCCACAAGTGTGGCATGCTTAGCTCCAAATTTGAGAGTATGACATGTATGTCCCAAACTAAGAAAGTATGGCACGACAC
AAATGCG