Detailed information on CNT30100738


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678571Oryza rufipogonSetaria viridis53.6251.8191.5200forward
CNT30522214Oryza rufipogonSetaria italica53.0825.2989.39198forward
CNT30141453Oryza rufipogonLolium perenne18.2321.4585.2968forward
CNT3016329Oryza rufipogonZea mays21.9816.3791.4682forward
CNT30361582Oryza rufipogonSorghum bicolor48.5332.9190.61181forward

Expression of CNT30100738

Peptides detected in this lncRNA

>peptide 1 (69 aa)
LDTLKTALRDLGPVAGVFLALLKELNEQRRGLVTLVWVNVEARHSVHDDLSWTTIGGCECRETTGQTSS*

>peptide 2 (64 aa)
MSGDHRSNIFLNSACSSLSLDGLPWSPQTTTRLTSSCRRGLRPYSSTRPVKFLTRSRRAMEKMIG

>peptide 3 (40 aa)
MVTTDNHKVNQLLQARVATIQLNQTSQVLDTVKTSHGEDDW

>peptide 4 (48 aa)
PRYAEDRPARSWSSGWGLPGTSQRTQRAAPRPCHPGMGQCGSQTLRSR*

Sequence

>CNT30100738
CCTCGATACGCTGAAGACCGCCCTGCGAGATCTTGGTCCAGTGGCTGGGGTCTTCCTGGCACTTCTCAAAGAACTCAACGAGCAGCGCCGAGGCCTTGTC
ACCCTGGTATGGGTCAATGTGGAAGCCAGACACTCCGTTCACGATGATCTCAGCTGGACCACCATAGGCGGTTGCGAATGTCGGGAGACCACAGGTCAAA
CATCTTCTTGAACTCAGCCTGCTCCTCCTTGTCCTTAGATGGGTTGCCATGGTCACCACAGACAACCACAAGGTTAACCAGCTCTTGCAGGCGAGGGTTG
CGACCATACAGCTCAACCAGACCAGTCAAGTTCTTGACACGGTCAAGACGAGCCATGGAGAAGATGATTGGCT