Detailed information on CNT30100733


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004001, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553221Oryza rufipogonOryza glaberrima89.8241.3896.371792forward
CNT30596399Oryza rufipogonOryza meridionalis86.4774.4289.971725forward
CNT30370734Oryza rufipogonOryza glumipatula86.7792.7792.951731forward
CNT30109481Oryza rufipogonOryza longistaminata91.8892.0294.931833forward
CNT30575721Oryza rufipogonOryza barthii86.87100.7696.311733forward
CNT30117985Oryza rufipogonOryza nivara87.2294.6291.841740forward

Expression of CNT30100733

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MAAFANKTVASLLNRHVILFPGLLSTLSTHPCPL*

>peptide 2 (32 aa)
MKTSTRPPRSISRSKPSMKTFRCFVPSPKPRL*

>peptide 3 (82 aa)
LLAPPSPAVPRRRSAGILRRLPGRRLPSRASPPRHIAARDWDRAARGGGRRPPQPLPSRPHLPFLSQAADKPGPRLLSSIGR*

>peptide 4 (42 aa)
MMRSQAFVVWPRIVVKDRFLWEIHPNTLQCDHTSIYGMPLVE*

>peptide 5 (42 aa)
PSSAAVAGGASPEIRRNSPPPPRSPAAEPSLAATAHRCPGLG*

>peptide 6 (57 aa)
MRFSWVSFGKALSRTSGTGQYRCKFRVVWVKRATSAEINELFEQPCPRSRASVRCFS*

>peptide 7 (61 aa)
MGCLWLSKLFSHGSWCANGCGIPRMRRRSVTHLLPIMGVFLPLLWRGTSRSRRHPRYFLSG*

Sequence

>CNT30100733
GCCTTCTAGCGCCGCCGTCGCCGGCGGTGCCTCGCCGGAGATCCGCCGGAATTCTCCGCCGCCTCCCCGGTCGCCGGCTGCCGAGCCGAGCCTCGCCGCC
ACGGCACATCGCTGCCCGGGACTGGGATAGAGCAGCGCGTGGAGGAGGAAGAAGACCTCCTCAACCACTGCCAAGCCGGCCCCACCTCCCTTTCCTCTCT
CAAGCCGCTGACAAGCCGGGCCCGCGCCTCCTTTCCTCCATTGGCCGCTGACAGCTTTGTTTTCGCGTTAAGAGCCCGAGTTCGAGGAAGCTCCGGACGC
CGCTTTCGAATGAGAAGACCCCAACCCTGTGCAAGGCAAACCTCTTTGGTCACTTTGCCTCTATATTTGCAAAGATATGTTGTTTGAAAAGTGCATTACT
TAGCATACACGATTAACATGTTTAGGCCTCGGATTGTTTATACAACCGACGGACCAACCTAGTAGTCGCATTTATATTACATAGGTTGATGTTTCCATAC
CTTTGATAGCTCCACAAATGTTTGCGCCGGTATCGTTACACGATTACCGAGGTAGTTTCGCTTAGCCATGCTTACGTTGTTGCCGTGTGGGAAACTTGGG
TTATTCCAAATACATGTTTAAAAATCCGGTACGTTGTACCGAGGAGTTGTGAAATAAAATGTGTTGTGAAAGTGGTGATGATGCGGAGTCAAGCCTTTGT
GGTTTGGCCACGTATTGTCGTTAAGGACCGATTCCTTTGGGAAATCCATCCGAACACGTTACAATGCGACCACACGAGTATTTATGGGATGCCTCTGGTT
GAGTAAATTGTTTTCACATGGGAGTTGGTGTGCCAATGGTTGTGGAATACCGAGGATGAGGAGACGAAGTGTTACACATTTATTGCCCATCATGGGTGTC
TTTTTGCCTCTATTGTGGCGTGGTACCAGTAGGAGTAGGAGGCATCCTCGGTATTTCCTGAGTGGATGACGGCTGTCATTGCCTGATACTCGGCTATGGA
TTTTAGCCCAACTAGGTGGTATGCGATTTTCATGGGTTAGCTTTGGAAAGGCCTTATCACGAACTTCCGGTACCGGCCAGTACCGGTGTAAGTTTCGTGT
CGTGTGGGTAAAGCGTGCAACCTCTGCAGAGATTAATGAACTGTTCGAACAGCCGTGCCCACGGTCAAGGGCGAGTGTAAGGTGTTTCTCATAGCGTAGA
TTTGTTTGACAAAGGTTTGTGGAAAAGTGGTTACTGAAAAAGGAACGTTACCAGAGTCCGCCTGTGTGGCAGACGGCTAACTTTTGTGGTTAGGAACGGG
TCTGTGTGACCTGGGGTGTCGTCCGACACCAAGGTGTTGTTAGGGCCATGATGACGTTGATGTGCTGGGATAACCAGGATATTTGTATGAACTGTGTTGT
TGTGAAAAAGGAACTAATAGAGAAAACAATTTAATTGTTGTTCGTTAATTGTGACAAGTTGTTGCAAAGCAACTTGTGGAATGGGTCGAGGCGTGAGCCT
CCTCTCGACAACTAAAACTTGACTCACTCACTAGGAATTTTGTGAAATAAATCATTTTGCCAAAATGGCAGCCTTCGCAAATAAAACCGTAGCCTCCTTG
TTAAACCGACATGTCATTCTTTTCCCTGGCTTGCTAAGTACGTTAAGTACTCACCCTTGCCCCTTATAATAATCTATAGAGTTTGAAGATGAAGACGTCG
ACCCGACCGCCGAGAAGTATCTCCAGGAGCAAGCCGAGTATGAAGACTTTTAGATGTTTCGTGCCTAGCCCCAAGCCTCGCCTGTGAAATAAGTTAGTTG
TCTAGGTTCTTTGCCTAGTGCGTAGTCGCTTAGTTGCTTAGTTCTCCGTGCTATTCATTTCTGCGCCGTCGCTTTTGTGTTTTTCTGTAATGTTGTGTTG
TTCATCTATGGGCATGTCCATGATAGCAACGTTTATAAGGACTACTACCCAGTGATGTAATAAAGCAGTTTACTTTGATTCCACATTTATTCTGT