Detailed information on CNT30100725


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003925, E-value = 2e-162

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691771Oryza rufipogonOryza sativa87.11100100365forward
CNT30553176Oryza rufipogonOryza glaberrima75.8997.25100318forward

Expression of CNT30100725

Peptides detected in this lncRNA

>peptide 1 (56 aa)
EFKLQQLQSQSQILTVPKKCNNCILTEGMGWHIYTVPYNNHLQASLARSKHKNEWA*

Sequence

>CNT30100725
GTGAATTTAAGCTGCAGCAATTGCAATCACAATCACAAATTCTGACAGTACCTAAAAAATGCAACAATTGTATATTGACAGAAGGAATGGGCTGGCATAT
TTACACTGTTCCATACAATAACCATTTGCAGGCTAGCTTAGCCAGGAGCAAGCACAAGAATGAATGGGCATAGCTGCGATTTCTCCCTAGAGAAACTAAA
TTGCAGGTTAGCCAGGAGCTAACGCATGCATGACAAAAAGACCAGAAGACTCTTACAAGACCAAGAGATAGGGTTTGCAGGTTAGCGAGGCGCTAACGCG
GTGCATATGTGCACTTCACGACCTTATTTCTTTTCTCGTTTAAATTTGGGGGAGGTGAGGTCAATTAGGTGTTGACCTGGATTTCCCCCAGAGAGTATGG
ACAGTCTGATGGGTTCTTC