Detailed information on CNT30100712


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30369807Oryza rufipogonOryza glumipatula45.0247.6100149forward
CNT30575809Oryza rufipogonOryza barthii10093.599.7331forward

Expression of CNT30100712

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MVHENLDTIDYMHINALTPELPHLLLHVHGVPPVLRLSPLLSSLIFLGAEEKQ

>peptide 2 (60 aa)
GLHECSTVKNSWPFYGSFYTAQYISSELIISVPIQACPRNCIPIVHTSRDRHPLRISNGS*

>peptide 3 (29 aa)
MAHSTLHNISAVNLSFQFQYKHVQETAYP*

Sequence

>CNT30100712
GGCCTTCATGAATGCAGTACTGTAAAAAATTCATGGCCATTTTATGGCTCATTCTACACTGCACAATATATCAGCAGTGAACTTATCATTTCAGTTCCAA
TACAAGCATGTCCAAGAAACTGCATACCCATAGTTCATACATCACGCGATAGGCATCCGCTTCGAATATCAAATGGTTCATGAGAATCTAGACACAATAG
ATTATATGCATATCAACGCCTTAACACCAGAGCTTCCCCACCTCCTCCTCCACGTTCATGGCGTCCCCCCTGTTCTTCGCCTCTCTCCGCTTTTGAGTTC
TTTGATATTTTTGGGTGCGGAGGAGAAGCAG