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Detailed information on CNT30100699

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30692428	Oryza rufipogon	Oryza sativa	65	80.7	99.86	715	forward
CNT30678417	Oryza rufipogon	Setaria viridis	14.73	49.09	91.98	162	forward
CNT30522336	Oryza rufipogon	Setaria italica	13.55	56.23	93.96	149	forward
CNT3070001	Oryza rufipogon	Quercus suber	17.36	36.52	82.72	191	forward
CNT30296550	Oryza rufipogon	Triticum aestivum	18	47.37	89.9	198	forward
CNT30589303	Oryza rufipogon	Musa acuminata	17.64	26.43	88.14	194	forward
CNT30553163	Oryza rufipogon	Oryza glaberrima	29	23.2	99.69	319	forward
CNT30439764	Oryza rufipogon	Aegilops tauschii	15.64	36.83	88.95	172	forward
CNT30447830	Oryza rufipogon	Saccharum spontaneum	13.45	25.87	92.57	148	forward
CNT301613	Oryza rufipogon	Zea mays	30.55	58.95	91.67	336	forward
CNT3067156	Oryza rufipogon	Leersia perrieri	16.27	66.54	96.09	179	forward
CNT30683907	Oryza rufipogon	Triticum urartu	27.82	46.58	90.2	306	forward
CNT30361799	Oryza rufipogon	Sorghum bicolor	17.45	20.15	92.71	192	forward
CNT30596039	Oryza rufipogon	Oryza meridionalis	8.91	37.4	98.98	98	forward
CNT30369879	Oryza rufipogon	Oryza glumipatula	29.73	45.54	99.69	327	forward
CNT30147849	Oryza rufipogon	Brachypodium distachyon	16.64	41.5	92.35	183	forward
CNT30575527	Oryza rufipogon	Oryza barthii	20.64	35.97	99.56	227	forward
CNT30116295	Oryza rufipogon	Oryza nivara	40.82	47.66	99.78	449	forward
CNT30603857	Oryza rufipogon	Oryza punctata	59.27	74.94	94.17	652	forward

Expression of CNT30100699

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MSVLPDRPRSDSILRARKDSHQWKRAYRGEAPMRTSLAKRSGRRMEARMPIMAETEWPTKAQRGMRSASRLS*

>peptide 2 (53 aa)
MPSTPRRSVLKTVWQTWREMSGRMLKRVRLNSCTAAGTSAPTARGAYPVAHAE*

>peptide 3 (46 aa)
MRVPLLGHTYRSRSCGGFFFFLLRFDSSLRLRARAARRGGVRGALD*

>peptide 4 (39 aa)
ILFNLTKSVVYCRSSENSMALSGFSQIFSRPEKRRVKMQ*

Sequence

>CNT30100699
GCATATTATTCAACTTGACAAAGTCAGTGGTATATTGTAGAAGTAGTGAAAACTCAATGGCACTGAGTGGATTCTCTCAAATATTTTCTAGGCCTGAGAA
GAGGAGGGTAAAAATGCAGTAAAATCCGACGCGGTAAAAAAAAAAAAAACAGTAGAGGGATGCGTGTCCCCCTACTGGGCCACACGTACCGTAGCCGCAG
CTGCGGTGGTTTTTTTTTTTTTCTCCTTCGTTTTGACTCGTCGCTGCGGCTACGCGCACGCGCGGCGCGCCGCGGTGGCGTGCGGGGGGCGTTGGATTAG
TACCGGGCGAGAGCGCGGCGGAGCACCTGGGCGAGGAGGCTGGGGGCGCTGAGGTGGGGGAGGTGACCCTCGGTCTGGAGGAACTCGACGGTGGCCGGGA
CGGAGACGTCGCGGGTGGTCTGGACGACGACGCAGGGGGCGCGGACCATGCCGAGCACGCCGCGGAGGTCGGTCTTGAAGACGGTCTGGCAGACGTGGAG
GGAGATGTCCGGGCGCATGTTGAAGAGGGTGCGGCTGAACTCCTGCACCGCCGCCGGCACGTCGGCGCCCACCGCCAGAGGCGCGTACCCCGTCGCCCAC
GCCGAGTAGTTCGCCCCCATCGCGTCGAACACCTGCTGTATCTCCTCCAGCTCGAACCCGCCGTGGTAGTCGCTGTCGTTCAAGAACCTGCACACACATG
TCCGTGCTCCCCGATCGCCCCCGATCAGATTCAATTTTAAGAGCGAGAAAGGATTCACATCAGTGGAAGCGAGCGTACCGGGGAGAGGCGCCGATGAGGA
CAAGCTTGGCGAAGAGGTCAGGTCGTCGGATGGAGGCGAGGATGCCGATCATGGCGGAGACGGAGTGGCCGACGAAGGCGCAGCGCGGGATGCGGAGCGC
GTCGAGGTTGTCGTAGCGGCGGAAGTCGAAGTGGTCCGGGTTGACGCTGCCGGCGCAGACGAGGTCGTAGAGCACGACGCGGTGGTCGCGGGTGAGGTAC
GGCAGCACGCGGCTCCACGCCGACTGGTCCGTCCCGAAGCCATGCGACAGCACCACCACCCGCTCGCCGCTCCCCACCACCCGCACGTTCAGGATCTGCA