Detailed information on CNT30100680


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691471Oryza rufipogonOryza sativa89.3895.0196.96362forward
CNT30107920Oryza rufipogonOryza longistaminata97.7873.0695.45396forward
CNT30574814Oryza rufipogonOryza barthii70.6219.4395.1286forward
CNT30117758Oryza rufipogonOryza nivara70.1299.397.54284forward

Expression of CNT30100680

Peptides detected in this lncRNA

>peptide 1 (42 aa)
FIRVFPRFACQRVESVVSEIRGHEEKSSEDQSEEARSVVLLS*

Sequence

>CNT30100680
TTTTTATTAGAGTTTTTCCTCGTTTTGCGTGCCAGCGTGTAGAATCCGTCGTTTCGGAAATCCGCGGTCACGAGGAAAAGAGTTCGGAAGATCAAAGTGA
AGAAGCAAGAAGTGTAGTGCTTCTGAGCTGAAGATGGAGTTAGAGGACCAAGGCTCAGACCCCAGTTGAGTTTTGCCTGTGGAGTGGAGCTGAAGCCCCG
CTAGGATCGCCTTTTTCCGCTGCTGCTGCTTTTGTTTCGGTGTGAGGACTAAGTGCCTCTTCTGTAAGTATTTTACGCTTTATTTACGTTTGGAACTGTT
TATTACTTGTCGTTTTGTGTACCCTGGCTGGTCCTGGACAGGGATTTAATACACAAAATAGTCTGGAAATTTGGGCTAAATTTCTGGGCGTGACATCAGG
CCACT