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Detailed information on CNT30100676


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39176|ERLI1_ARATH, E-value = 4e-18

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691960Oryza rufipogonOryza sativa48.0810096.45338forward

Expression of CNT30100676

Peptides detected in this lncRNA

>peptide 1 (64 aa)
WDRWIEQELASTVCVELTGMQKRRDAVRTDAYTMRSIEYKLINQLCRYTYTSRRMKHALITSWN*

>peptide 2 (85 aa)
MGRLRLMPRMSARPWMRLQHGCRGGVPSCTFISPFSTFAHTPSFSVSIGHLPPPPPPPLPPPPPPPLPPPPEPPPPLPPPPEPPPP

Sequence

>CNT30100676
TGGGACCGATGGATCGAACAAGAGCTAGCTAGTACAGTATGTGTAGAATTAACAGGCATGCAGAAAAGACGAGATGCAGTACGTACTGATGCATATACGA
TGAGATCCATCGAGTACAAATTAATTAATCAATTATGCAGATACACATATACAAGTAGACGAATGAAGCATGCTTTAATTACGTCGTGGAACTGAATCAT
ATGCATGCATATATATCTCATTAATTTACGGGATGAAGGAGGAAATTAAGGCACGCAGATACATATGATGATTTGAACAAGGAACAAACTAGACATAGAT
AGATATATAGTTGTACGTGGCCTGGTGGTCGTTCTTGTGTGTAGCAAGCAGTGAAGTAGAATGGAGCAGCAGCTATATTAGTTGCTGCACTGGAAGCCGG
AGGGGACGGAGCGGCCGCAGTAGTTGACGAGGAGGCTGAGGTTGATGGGGAGGTTGAGGTTGATGCCAAGGATGTCGGCGAGGCCCTGGATGAGGCTGCA
ACACGGCTGCCGCGGCGGCGTCCCCAGCTGCACGTTTATCAGCCCATTCAGCACGTTCGCGCACACCCCCAGCTTCAGCGTGTCGATCGGGCATCTTCCT
CCTCCCCCGCCGCCGCCGCTTCCTCCTCCTCCGCCGCCTCCGCTTCCTCCACCGCCTGAACCTCCGCCGCCGCTTCCTCCTCCACCTGAACCGCCGCCTC
CAC