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Detailed information on CNT30100664


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003442, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553012Oryza rufipogonOryza glaberrima10091.2997.83828forward
CNT30369760Oryza rufipogonOryza glumipatula10096.3999.4828forward

Expression of CNT30100664

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MKTIIIKRIEDSIFFFLRICRENYSDSGTGSSSHLKLNTTLYQEQMNNEW*

>peptide 2 (39 aa)
MNGRSNLQWRIMDHRIGLSSRAIYDYMHSIIDAIMQVCN*

>peptide 3 (29 aa)
MMVLIIQFLLLILKVLCQDKKSLCKPSKP*

Sequence

>CNT30100664
GAAAGGGTTAGAAACCCTTAGATTTCATGCCATCAAGCGTAACAGTATGCATACTATGATGTCCAATGTGGGTGTCTGAACTGAAATCTGAACTCTGAAC
TCTGAAGGCTGTTGTTTCCATCAGGGTGCATTGGTTCAGCAGAGATCGGTGATCTATGTTTTCATATTTGGTCACGTTCTACCGGTCTTTTTCGATGGAA
ATGAAGGTAATTGGAGGAGTTCTATCTGTTTGATGGAATTCAGAACCAAAATCCGAATTCCACAAAATGGCTAGAGGAAAATTTTTAGGGCTATTTGCAA
TTCCACAACCATAAGCATGGCCAACTGGTAGTTCTCCAAGTAAAAGAAGTTAGGAGCTGGTTATGATGGTACTAATTATTCAGTTTCTTCTATTGATCCT
GAAAGTTCTATGCCAGGATAAGAAAAGCTTGTGCAAACCCTCCAAGCCATGAAAACAATTATCATCAAGAGAATTGAAGATTCTATTTTTTTTTTTCTTA
GGATCTGCAGGGAAAATTATTCAGATAGTGGAACAGGTTCAAGTAGCCATTTGAAACTCAACACAACTTTATATCAAGAACAAATGAACAATGAATGGTA
GATCCAATCTTCAATGGAGAATCATGGACCACCGAATTGGGCTATCTTCCCGAGCTATCTACGACTACATGCATAGTATAATAGATGCAATCATGCAAGT
GTGCAACTAGTAGTTTTTTTTTTTTCTGAAGGAGATGAGATTAGGTATAGCATGTAATGGTCCTGGTGTATAATGCCATGGCACACTCAACTTGCATTTA
AACAATGCTAGTCCCTGCAGACCTTGCC