Detailed information on CNT30100657


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6AVI0|RSLE2_ORYSJ, E-value = 0.0

BLAST vs NONCODE:
NONORUT003941, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30249176Oryza rufipogonAvena sativa21.3190.6685.86573forward
CNT30452219Oryza rufipogonSaccharum spontaneum70.8858.4385.361906forward
CNT30346251Oryza rufipogonEragrostis tef22.1398.1885.88595forward
CNT30362965Oryza rufipogonSorghum bicolor71.6367.5384.841926forward
CNT30596250Oryza rufipogonOryza meridionalis53.8171.6394.751447forward
CNT30107897Oryza rufipogonOryza longistaminata75.0586.6898.462018forward
CNT30580242Oryza rufipogonEchinochloa crusgalli70.5873.484.981898forward
CNT30497727Oryza rufipogonDigitaria exilis15.3299.0485.19412forward
CNT30557998Oryza rufipogonPanicum hallii39.5743.0186.941064forward

Expression of CNT30100657

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MVVADPRAGGARSLGLGPRSSKAGASGEADLVVGAGERRTRWGEENLPRLGAGFPVDRV

>peptide 2 (91 aa)
MRVPVPAEKIELPLLTIDIGMAKISRAILERVGNLRVLSFHQFRMSNSWMRGVRDSSRYCSSSDFVGWLVAISERYISKSTSPSPVEGAVA*

>peptide 3 (39 aa)
MNSIIHHLNILCSFNTINFRVAELNKLHLEARIHHNSNS*

>peptide 4 (31 aa)
ATMDDNEGKSRHKASTDTHYAASAHTTRNVR*

>peptide 5 (36 aa)
MSFLIAWDNLITLNHLEVVASFLSHASWLVARTHKI*

>peptide 6 (32 aa)
MGITPYNKQLALEHEVVLVGEIIPQIRTINIM*

>peptide 7 (45 aa)
LQWMIMKGSPDIRHQLIHIMQPAHTLHVMSGNSDGILQDKAYIIT*

Sequence

>CNT30100657
GCTACAATGGATGATAATGAAGGGAAGTCCAGACATAAGGCATCAACTGATACACATTATGCAGCCAGCGCACACACTACACGTAATGTCAGGTAACTCC
GATGGCATACTACAAGACAAAGCGTACATAATAACATGAAGGAGTTAACAGAGTACGATACAGCACATTACACCCTAGGAGGATAAGCTCGGATCTCAAT
CAGTTCATAGTCCCTGCCTAAAATACGGATAGGATGCTGTTGCTTCACAAGAGGAAGGGGGGGAGGGGGGGGGATCACGGCGAGCCTATGGTGCATCCAC
CTTGACAAGCGTGGTACTCGGCGCCTCCGGGGTAGCTGGTAAATACTGAAGCCAGTCTTTGGCGCAGACGAGCGCCTCCACAATTTCTGGACGCAATGAG
CTTCTGTAGTCATCAAGCATGCGAGTTCCTGTTCCAGCAGAGAAAATAGAGTTGCCGCTGCTCACCATCGACATCGGAATGGCCAAGATATCCCGGGCCA
TCCTTGAGAGAGTAGGGAACTTGAGAGTGTTGAGCTTCCACCAGTTCAGAATGTCAAATTCCTGGATGCGCGGAGTGAGGGACTCATCCAGGTACTGTTC
CAGTTCAGATTTTGTTGGCTGGCTTGTAGCTATCTCAGAAAGGTACATATCAAAGTCCACAAGTCCATCGCCGGTCGAAGGAGCAGTTGCTTGAGTACCA
TTCTCGCTAGCAGGTGCATTATTACCGTCCCCTTGCTCAACATAAGCCGGCGTCAAGGGGAGGGGTTGTGCAACATACTCCTTGTAAAGCTCATGAACAG
CATCATCCACCACCTTAACATACTTTGCAGCTTCAACACCATAAATTTTCGAGTAGCTGAACTCAACAAGCTTCATCTTGAAGCGCGGATCCATCACAAC
AGCAATAGCTAACACAAGGTTGCAATCTTTCCAGTACTTGTCAAACCTCTCGTGCATATCCTTGGCAATGCTGCTGAAAACAGGGTCTTCATGCCCTGTA
GCATTTGACAGCTCTAGTTGAAGTTTCCATGCCTCATGGAAAAAGAGATTTGAAGTTGGATTTGCTGCAGCCATGATGCTATGTGCTGAGTCATACAATA
GCTTCAAGTAATTGCAGGCAGCCTCAACTTTTTTCCAGTCCTCAGCGGACGGTGCCTCATTGTAGTTATCATCACTTGTCTCAAGAGTAGAAAAGGCCTG
CTTATAATCCAAGGCAGCCAGCAGCATGAGATAGGTAGTGTTCCACTGTGTCGTAACATCCAGACAAAGGGTCTTGGTACTTGGGATCTCTAGCTGCAGA
GCAATCTCTGCAAACTTCTCCTCACGGCTAGGAGAAGCTTTTATGAACTTAATGCTTTCACGGATATTATAGATGACACCATGAATTGAAGCAATAACAT
CCTGAGCAACTGCATTCAGGATATGGGCATAACACCTTACAACAAACAGTTGGCCCTTGAGCATGAGGTTGTTCTTGTTGGAGAGATAATCCCTCAGATT
CGCACTATAAATATCATGTGATGAGCAATCATTGTCCAATGTGATGGTGAATAGTTTGTCCTTCATATTCCAGTCTGAAAGGCTTGTACTAATAGCTTCA
CTAAGTGCATTCTCTGAATGAGGAGAAGACACCATCATGAAGTTTAGCATTCTTCGATGTATCTTCCACTCAGAGTCAATAAACTGCCCAGCAAGTGAAA
CATAGCCAAGAGTTTGGCTAGTTGTCCACAATCCAATAGTGAGGCTAATCCTTCCAGGCATAGTGCTGAATGCTTGCATGAGGTTTTCCTTTTCTTTCTG
GTAAACAGCATACACCTCCCCCTCCATTGTCTCAACATCTACAACCCTGAAACGTGGCTGCAGACTGTCAATAAAGGTAGTGAAGGCTGGCTGTTGAACA
ATGTGAAGTGGATAGTCATGCAAAATGATCATCTTCGCCAGATATGAACAACTGCGGTCTTGATCAAAAGCAGCATTTGCATAACCAGTATATCTGTAAC
GCCTCTTAGACGGGCGCTCCACAGTGCCCTCGCCATCATTGTCAGTCCCTACAGCTGGAGTCAGTGCTAGCTTGTGCTCTTGGTTCTTAATTATAGGACA
TGAACCCAAGGTAATGTGCCTCTTGAGATGGCTAGTACCCGCAATTTTTGAACCAGAGCTGTAAGCAAAAGTTTGCTTACACAGTTTGCAGCACGCCCGT
GTAGCCCCTCCAGAGACAGCTTCAATAGTGAAGTGCTCCCACACTAGAGACTTCTTCCTACGGCGCCTTGATGTTGGAGGGGTACTCATCTCAGCACTGA
CCAATCCATTTACTTGGACCTCGTCACCTTGAGCTAAGTCCTCCGCAAGGACCAATTCATCACCCTGAACTTCCTCAGCATGAGCTTCCTCATTGCTTGG
GACAATCTCATAACCTTGAACCATCTGGAAGTCGTTGCCAGTTTCCTCAGTCATGCTTCTTGGCTAGTAGCTAGAACTCACAAAATCTGAGGAGGAGGAG
GAGGAGAGGGATGGTGGTGGCAGATCCGCGCGCGGGCGGGGCTCGCTCGCTAGGGCTCGGCCCAAGAAGCTCCAAGGCCGGGGCGAGCGGCGAAGCAGAT
CTGGTAGTAGGTGCAGGGGAGAGGAGGACGAGATGGGGGGAAGAAAATTTGCCTCGTTTGGGTGCGGGTTTTCCGGTGGATCGGGTGGG