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Detailed information on CNT30100652


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30595918Oryza rufipogonOryza meridionalis60.3147.9497.91430forward
CNT30369934Oryza rufipogonOryza glumipatula59.7554.1399.77426forward
CNT30116303Oryza rufipogonOryza nivara59.7549.5399.77426forward

Expression of CNT30100652

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MQAKPFDFSSFETRSADLYTYTKLDSGTSDQ*

>peptide 2 (37 aa)
KACRPSHSILVASKQDRPIYILILSWIRAHLISDRIG*

>peptide 3 (59 aa)
MSGQRPGGGGWFGGGGDGIGAGGGGIGGMGPGDGGCVGGGDGIGAGGGGIGGIGPGDGG*

>peptide 4 (71 aa)
MVVELGEVVTASAPSVRETVVVWAVVLVALLAPQWVTVLAAEHGRTARSGGRWQRGRTRRTPWRPPSLATTH

Sequence

>CNT30100652
GTAAAGCATGCAGGCCAAGCCATTCGATTTTAGTAGCTTCGAAACAAGATCGGCCGATCTATATACTTATACTAAGCTGGATTCGGGCACATCTGATCAG
TGACAGAATAGGTTGAGTTCGACGGTCTTGCCGCAGAGGCCCAGAATCACCCTGATCGGAGGAGGAAGGACGCCGATAGGGCCTTTGAGAGCGCGGCACA
GGCAGTCAGTGGCGCCGCTGCTGGATAGATCCTCCAGCGGTGGGCAACACTGTTGCCTAGCCTTGCTTGGATTTAGTACCAGATCGAATAACGAGAGTTT
TGTGCACTCTTTAAGGATAACTATTTTGATGAGTGGGCAACGGCCGGGTGGCGGTGGTTGGTTTGGCGGAGGCGGTGACGGCATCGGCGCCGGAGGTGGT
GGCATCGGCGGCATGGGTCCTGGGGACGGTGGCTGTGTTGGCGGCGGTGACGGCATCGGCGCCGGTGGTGGTGGCATCGGCGGCATCGGTCCCGGGGATG
GTGGTTGAGTTGGGGGAGGTGGTGACGGCATCGGCGCCATCGGTCCGGGAGACGGTGGTTGTGTGGGCGGTGGTGTTGGTGGCATTGTTGGCGCCACAAT
GGGTGACTGTGTTGGCCGCTGAGCATGGGCGAACGGCGAGATCGGGAGGACGATGGCAACGAGGACGAACGCGGCGGACGCCATGGAGGCCACCATCGTT
AGCTACTACGCAC