Detailed information on CNT30100650


BLAST search results

BLAST vs Swiss-Prot:
sp|P48489|PP1_ORYSJ, E-value = 4e-137

BLAST vs NONCODE:
NONPOPT001921, E-value = 3e-42

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30402695Oryza rufipogonBeta vulgaris12.0637.3983.7286forward
CNT3094286Oryza rufipogonSolanum tuberosum38.1558.8784.93272forward
CNT30553142Oryza rufipogonOryza glaberrima40.53100100289forward
CNT30206348Oryza rufipogonHelianthus annuus38.8537.0884.12277forward
CNT30338251Oryza rufipogonEragrostis tef48.5365.2890.46346forward
CNT30595937Oryza rufipogonOryza meridionalis58.77100100419forward

Expression of CNT30100650

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MRPPYHSCPNLERLFLDLTKVGRGKLFISSKCVRSGERPPCMHNILSSISAATGRQLKQSVKTFHRRTLNRRLHSS*

>peptide 2 (64 aa)
MDRVWDLDGRLELEEIGLAEEDFSGYSAELADLRLGELHLLPRARRPHLEQAADDIVEEDGVHPA

>peptide 3 (57 aa)
MGASSSRRLGWLRKISRDTVQSWRISDSESCTCFPGRAVRTSSRRRMISSRRTASIPP

>peptide 4 (45 aa)
MQGGGILFPNFVCLDQHNHLRIDNWLLGENHHTQKALEGHCTDHG*

>peptide 5 (35 aa)
MIASEKKKILRVLDFVCKEEAYCFQTLFASINIIT*

Sequence

>CNT30100650
ACCTGATGTGCCCGGCAAATAAGATCAAGGTCATGTTTTTCCAGGAATTCTGAAACTTTGTCAGCACCAAAAGTGTATGAGACCCCCCTATCATTCATGC
CCCAACCTTGAACGTCTTTTCCTGGATCTGACCAAAGTAGGACGGGGCAAGCTCTTTATCTCATCTAAATGTGTCAGATCAGGAGAGAGGCCACCATGCA
TGCATAATATTTTATCATCAATTAGCGCAGCCACAGGGAGACAGTTAAAACAATCAGTGAAGACCTTCCATAGACGCACATTAAATCGGCGTTTGCATTC
ATCATAAAATCCATATATCCTGTTTATTGATGCACACTCATGATTGCCTCTGAGAAGAAAAAAATTCTCCGGGTACTTGATTTTGTATGCAAGGAGGAGG
CATATTGTTTCCAAACTTTGTTTGCCTCGATCAACATAATCACCTAAGAATAGATAATTGGCTTCTGGGGGAAAACCACCATACTCAAAAAGCCTTAGAA
GGTCACTGTACTGACCATGGATAGGGTTTGGGATCTTGATGGGCGCCTCGAGCTCGAGGAGATTGGGCTGGCTGAGGAAGATTTCTCGGGATACAGTGCA
GAGCTGGCGGATCTCCGACTCGGAGAGCTGCACCTGCTTCCCCGGGCGCGCCGTCCGCACCTCGAGCAGGCGGCGGATGATATCGTCGAGGAGGACGGCG
TCCATCCCGCCGC