Detailed information on CNT30100634


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRR5|TBA3_HORVU, E-value = 1e-50

BLAST vs NONCODE:
NONGMAT000219, E-value = 3e-50

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30504800Oryza rufipogonNicotiana attenuata54.0242.5385.11188forward
CNT30144688Oryza rufipogonMedicago truncatula45.444.5185.44158forward
CNT30229012Oryza rufipogonAnanas comosus62.6426.388.53218forward
CNT30204030Oryza rufipogonHelianthus annuus53.1644.5885.41185forward
CNT30360852Oryza rufipogonLactuca sativa62.6439.7181.65218forward
CNT3052700Oryza rufipogonAmborella trichopoda44.5449.0585.81155forward
CNT3024728Oryza rufipogonPopulus trichocarpa56.3224.1486.73196forward
CNT30119652Oryza rufipogonCitrus clementina20.989.5889.0473forward

Expression of CNT30100634

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MVGLLRRDHWSVGRKHEVDPWVGHKVGLELIDIHVQSTIKPQGGGQG*

>peptide 2 (56 aa)
LEYMRSNLWSMRENTSTTLVELEIMHTALCTLARPCTCRGEGRTWPSWRMARRHCW*

>peptide 3 (66 aa)
LGVHEVELVVDAGEHLHDAGGVGDHAHGPLHLGEAMYLPWRGSHLAIMEDGSKALLVISATESCSW*

Sequence

>CNT30100634
GCTTGGAGTACATGAGGTCGAACTTGTGGTCGATGCGGGAGAACACCTCCACGACGCTGGTGGAGTTGGAGATCATGCACACGGCCCTCTGCACCTTGGC
GAGGCCATGTACTTGCCGTGGCGAGGGTCGCACTTGGCCATCATGGAGGATGGCTCGAAGGCACTGTTGGTGATCTCGGCAACAGAGAGTTGCTCATGGT
AGGCCTTCTCCGCAGAGATCACTGGAGCGTAGGACGAAAGCATGAAGTGGATCCTTGGGTAGGGCACAAGGTTGGTCTGGAACTCATTGACATCCACGTT
CAGAGCACCATCAAACCTCAGGGAGGCGGTCAGGGATGAGATAACCTG