Detailed information on CNT30100585


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SK52|PER18_ARATH, E-value = 6e-35

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30385102Oryza rufipogonTriticum turgidum73.3840.3781.14350forward
CNT301235Oryza rufipogonZea mays73.1728.6582.23349forward
CNT30338445Oryza rufipogonEragrostis tef46.5418.8680.63222forward
CNT30595986Oryza rufipogonOryza meridionalis74.4237.183.66355forward
CNT30116322Oryza rufipogonOryza nivara76.130.3582.37363forward

Expression of CNT30100585

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MLALSDTIFAVAGDVSSAASDAKSTLCATTFL*

>peptide 2 (48 aa)
MSEGAATRSETKEEQWERPTVCAPESTTMSSASRPLAANAPMSWLTLKL

Sequence

>CNT30100585
GATGATTAGTTGACGACCCTGCAGTGCCTCCTGATCTCGCCGGGGTAGCCGGTCTTGACACCGACGGATGCCATCTTGACGAACGCCTTGGCGAACTTGT
CCTCCCACCACCCCGGGATGTTGGCGTTGTCCGACACCATCTTCGCCGTCGCCGGCGACGTCAGCAGCGCCGCGTCCGACGCGAAGAGCACCTTGTGCGC
CACCACGTTCTTGTAGTACTGGTTGTCGAACGCGTTGGGCGTGACGGCGTCCTGGTTCACCGTCGGGTCGTTGCTGGAGGTCGGGTTGGCCGGGCACCTC
TGCTTGAGGAAGTTGGCGAAGCCGCCGTTGATGTCGGAGGGCGCGGCGACGCGGTCGGAGACGAAGGAGGAGCAGTGGGAGCGGCCGACGGTGTGCGCGC
CGGAGAGCACCACCATGTCCTCGGCGTCGAGGCCCTTGGCGGCGAACGCGCCGATGAGCTGGTTGACGTTGAAGTTG