Detailed information on CNT30100580


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30395922Oryza rufipogonTriticum turgidum24.1752.6686.24109forward
CNT30364692Oryza rufipogonSorghum bicolor26.8320.5886.78121forward
CNT30575237Oryza rufipogonOryza barthii55.2157.2499.6249forward
CNT30495845Oryza rufipogonDigitaria exilis28.3820.9886.72128forward
CNT30556352Oryza rufipogonPanicum hallii29.0518.2288.55131forward
CNT30112638Oryza rufipogonFicus carica21.7314.3582.6598forward

Expression of CNT30100580

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MLVEDLIHRLNIDINQITCVCDIAFWGQIQVYSGSPVVTDKRRIL

>peptide 2 (54 aa)
VPFADATEIIDRLLQVVLVLPEYLLVQIDLPKTHFLKFLQQFLFCEIVNAMMIR*

>peptide 3 (50 aa)
SHSLTPQRSSTDCSRLYLFCLSISLFRSTCLKPISSSSFSSFSSVRLSMP*

Sequence

>CNT30100580
GTCCCATTCGCTGACGCCACAGAGATCATCGACAGACTGCTCCAGGTTGTACTTGTTCTGCCTGAGTATCTCCTTGTTCAGATCGACCTGCCTAAAACCC
ATTTCCTCAAGTTCCTTCAGCAGTTTCTCTTCTGTGAGATTGTCAATGCCATGATGATCAGATGATGATGCACCAACAGACGCAGGTGCATTACCAGCAG
GCACATTAACAGTTGGAGGCACAGGAGTCACAGCAGGTTCAGGCGCAGGATTCTTGGGCTCGTCAATCTGGTGGTGTATCAAATGTTCAAGTAACTCCTT
GTTTGTGCTATTGACATGTTGGTTGAAGACTTGATCCACAGGCTCAATATTGACATCAATCAAATTACTTGTGTTTGTGATATTGCTTTCTGGGGGCAAA
TTCAAGTTTATAGCGGCAGTCCTGTTGTTACTGACAAAAGAAGGATCCTCC