Detailed information on CNT30100546


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30107391Oryza rufipogonOryza longistaminata84.2282.7898.8918forward

Expression of CNT30100546

Peptides detected in this lncRNA

>peptide 1 (83 aa)
RGQLRYLFASPPPGATCVAAFASLPRPHAAPRAPARARARAPSSRRVRRPDPAHAPPPFEPPSPAPPRATARRSRTDLVNSPP*

>peptide 2 (78 aa)
AASSDISSPLLRREQHVSRLLLRFHGHMPRHGHPRARAPARRPHAASAAQIRRTLLPLLSRHRRHRRARRRGAAAPIS*

>peptide 3 (47 aa)
MNSSTYEHLARLRRLYIVYWLPLLNVSLITHDMLAWKGNFELIMRFA*

>peptide 4 (59 aa)
SRPAQISLRLSSAGSNMCRGFCFASTATCRATGTRARARPRAVLTPRPPPRSGARSSPF*

>peptide 5 (29 aa)
MRLNNICLLLEGKRCMTVLKQMKNSSFYEV

>peptide 6 (45 aa)
MPFSASSRRPLPSTVPVRRARGFSDSCKGMVTSLWQQLHILQENL*

Sequence

>CNT30100546
TCGCGGCCAGCTCAGATATCTCTTCGCCTCTCCTCCGCCGGGAGCAACATGTGTCGCGGCTTTTGCTTCGCTTCCACGGCCACATGCCGCGCCACGGGCA
CCCGCGCGCGCGCGCGCCCGCGCGCCGTCCTCACGCCGCGTCCGCCGCCCAGATCCGGCGCACGCTCCTCCCCCTTTTGAGCCGCCATCGCCGGCACCGC
CGCGCGCGACGGCGCGGCGCAGCCGCACCGATCTCGTGAATTCCCCTCCCTGACCACTCTCCCGGCCCCGGCCCCAGCCACCACCTAAATCGCAATGCCT
TTCTCCGCTAGCTCCCGCCGTCCCCTCCCCTCGACGGTGCCGGTGCGGCGCGCGCGTGGTTTCTCAGATTCATGCAAGGGGATGGTGACAAGCTTGTGGC
AGCAACTGCACATCTTGCAAGAAAATCTTTAGGGTTTTTCAGACCATACCGATGATTTTCTTGCAAGTTGTGCAGTTGTTGTCTCAAGCTTGCTGCCTCC
CTTTGCCAAAACTATCAAGTGAGAAAGCAGGGTAGAGTTATTCAATTACAGGCACACAAGACAAAATTAAAGTAATAAACATGTCTGACCAACAAACACA
ATGATTAATAACAAAACTCTTGTGGCATGAGATAATATTGAAGCATGATGCTTACAACAGTTATAATATGAAAACTAGATGGAGGCAGTGCCACCAGGCA
ATTGCAAATGAACTCATCAACATATGAACATCTAGCAAGATTACGTCGTCTCTACATTGTGTATTGGCTTCCACTGCTGAATGTTTCTCTTATTACCCAT
GACATGCTTGCTTGGAAGGGCAATTTTGAGTTGATCATGAGGTTTGCATGAATTTCTCTAGGAATGCCCAGTGAGTGATCCTGTAAATTTTGGAGTTGAT
TGTTCATCAGAATAGCACTATAATTTTCCTGTCACCTGTGCTTTGGTAGCGGAACGTTCATTGTCCCATGCTACTCAGCTTTGTACTTTTGTAAATCAAA
TGAGACTGAATAATATATGTTTACTTTTGGAAGGAAAAAGATGTATGACTGTTCTCAAGCAAATGAAAAATTCCAGCTTTTATGAAGTTA