Detailed information on CNT30100543


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30115937Oryza rufipogonOryza nivara56.5481.2299.81519forward

Expression of CNT30100543

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MLFRSHQDLELEQSGISLLFLINLVPAMIRNKKRSPALLENALTCGP*

>peptide 2 (53 aa)
MASIFISGAALILIWELGHVKSFAMSSKRGRFAEVVHQDAQGVSRECTSSPGA*

>peptide 3 (40 aa)
MSPFSLASLPLLLCCSAHIKILSLSSPASLSCFSSIWCRL*

>peptide 4 (41 aa)
MNLCSDLFFPKVPNPLSLCSCLHFPLHPSLFYYVVPLTSRS*

>peptide 5 (33 aa)
FAPLSCPAIHLFPLQRLAKLVELMKEAACSSSL*

Sequence

>CNT30100543
CTTTGCACCACTTTCCTGTCCAGCTATTCATCTCTTTCCTCTCCAGCGTCTTGCCAAACTTGTTGAGCTCATGAAGGAAGCAGCTTGCAGCTCCTCGCTG
TAGCAGGGAGTCAGGTAGGATCTATCCATTTCCTGCGTTTGTTTGAGTATTGGAAGCCTGGAAGGTCCTCCTGTTTCCTGCTTTGATTTGGCAATTAGGA
GCCTCAAATGGCTTCAATCTTCATATCAGGTGCTGCATTGATTTTAATTTGGGAACTGGGGCACGTCAAATCCTTTGCGATGAGCAGCAAACGGGGACGT
TTTGCTGAAGTAGTCCACCAAGATGCGCAAGGTGTGAGTAGAGAGTGTACATCGAGTCCCGGCGCCTGACGAAAGTCGAGCTCACTAACAGAGCAAGACA
TGAATCTTTGCTCTGACCTCTTCTTCCCCAAAGTCCCAAACCCATTGTCTCTGTGTTCATGTCTCCATTTTCCCTTGCATCCCTCCCTCTTCTATTATGT
TGTTCCGCTCACATCAAGATCTTGAGCTTGAGCAGTCCGGCATCTCTCTCTTGTTTCTCATCAATCTGGTGCCGGCTATGATTAGAAACAAGAAGAGATC
ACCGGCGTTGTTGGAGAACGCTCTGACGTGCGGGCCATAGGGCCATATTGCAAAGTTTGGTAACAAAACCTAGTGTAAAGTGAAAAGGCATATGGATGTA
TGGTTTAAAATGCAACTTGGGTAATAAAGCCTAGCCCAAAATGCAATTCACTCTTTTTTTTAATTGGATTACTGATATTAGGTTGTCCATTGTTTATTGA
CAGATGTATTAGGTAGGACATGAGGCTACACTAAATACATGGATTTCTTAAGCCTAATATGATTGCATAGTTTGATAGGCAATCCATCTGTGAACATTTC
ATTTAGAGTGTGTGCGAG