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Detailed information on CNT30100515

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30678334	Oryza rufipogon	Setaria viridis	99.61	26	91.3	253	reverse complement
CNT30537475	Oryza rufipogon	Eucalyptus grandis	29.92	1.88	90.79	76	reverse complement
CNT3021516	Oryza rufipogon	Citrullus lanatus	92.13	12.72	90.17	234	reverse complement
CNT30730546	Oryza rufipogon	Corchorus capsularis	35.83	15.4	91.21	91	reverse complement
CNT30406883	Oryza rufipogon	Beta vulgaris	22.44	22.18	91.23	57	reverse complement
CNT30524944	Oryza rufipogon	Phaseolus vulgaris	96.85	24.7	87.8	246	reverse complement
CNT30201813	Oryza rufipogon	Pisum sativum	36.22	5.61	90.22	92	reverse complement
CNT30710142	Oryza rufipogon	Glycine max	37.8	21.52	88.54	96	reverse complement
CNT30300194	Oryza rufipogon	Triticum aestivum	98.03	11.83	91.16	249	reverse complement
CNT30220990	Oryza rufipogon	Hordeum vulgare	28.35	5.68	98.61	72	reverse complement
CNT30384312	Oryza rufipogon	Triticum turgidum	98.03	5.71	91.16	249	forward
CNT30569656	Oryza rufipogon	Actinidia chinensis	36.22	10.93	90.22	92	reverse complement
CNT30543269	Oryza rufipogon	Brassica napus	36.22	3.11	91.3	92	reverse complement
CNT30509374	Oryza rufipogon	Solanum lycopersicum	24.8	31.5	85.71	63	reverse complement
CNT3018229	Oryza rufipogon	Zea mays	74.41	84.38	95.77	189	forward
CNT30355468	Oryza rufipogon	Lactuca sativa	88.58	18.4	90.67	225	reverse complement
CNT30416238	Oryza rufipogon	Papaver somniferum	99.61	33.03	89.72	253	reverse complement
CNT30331679	Oryza rufipogon	Dioscorea rotundata	37.8	14.01	88.54	96	reverse complement
CNT30578120	Oryza rufipogon	Oryza barthii	59.45	26.22	89.4	151	reverse complement

Expression of CNT30100515

Peptides detected in this lncRNA

>peptide 1 (32 aa)
KGGRVKDLPGVRSHYSRSPRCCLSKESSTRAF*

Sequence

>CNT30100515
CAAAGGAGGAAGGGTTAAGGATTTACCCGGTGTGAGATCACATTATTCGAGGAGCCCTAGATGCTGTCTCAGTAAAGAATCATCAACAAGGGCGTTCTAG
TGCGTTGTAGATTCTTATCCAAGACTTGTATCATTTGATGATGTCATGTGAATCACTAGAAACATGTGAAGTGTATGGCTAACCCAATAACAACCCAATA
ACGAAAGTTTCGTAAGGGGACTGGAGCAGGCTATCATGATAAAAAAGATCTTCT