CANTATAdb - search

Detailed information on CNT30100489

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004359, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30554123	Oryza rufipogon	Oryza glaberrima	47.04	37.82	89.64	357	forward

Expression of CNT30100489

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MVFEPFHSISWQPGVRMVVVTVAMPISAAAGISSASSLLSRPTRTSSEIR*

Sequence

>CNT30100489
CCTTGATCCCAGGTGAGCTTCGGAGCAATTCCTCACTCGTGTAGCATCTTTAGATGGTCTTTGAGCCGTTCCACTCTATTTCTTGGCAGCCCGGAGTCCG
GATGGTGGTTGTCACCGTTGCCATGCCGATTTCCGCCGCCGCGGGGATATCCTCTGCATCATCGTTACTATCCAGGCCTACCCGTACCTCGTCCGAGATT
CGATGATTGCTTAAACGGTGAAGAAGTGATTTAGGTGCTGACTTTTTCCAGTTACAAGGATTTAGACTTAGTCTTTGAGTGATGCGGGTAATCGACTGCT
TCTTCTAGCACTTGAACTTAATGGGGTAAACCCCTAGTCGGTGTGCTTGTGGATTGGGTAGACAAGCTTCCGCTGTTCTATTATTTATTTGGCCGGTCGG
CCAATGTAACTAAAGTAGATGTAGTTTATAATCACTTTCATCTTATTTGTGTTTGCTATGTATAATCATGCTTGAGATGAAAGTGTGAATCTAGTGCACA
TCCTGGGAAATAGATTCACATGAGTATGAGTTAAGAATATTTGAGATGTTGTAGATCTTTAGCCATTTTTGTCAAGTCTCCTGAATGTGTAACACATCTG
GTCACCGTCTTCGAGTGGTTTGACGGGCACATCTCAGGCTGAAGTTGACTGGCAGGCTAAAGGCCCAGCAATGTCTCCAATATTCCTCTCTCGAGGTGTC
GGATGTTTTATTATGCTTGTTTGATGACATGAATTATTCATTTCATCTCTCAATTATAA