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Detailed information on CNT30100477

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30110570	Oryza rufipogon	Oryza longistaminata	55.87	34.26	96.5	371	forward
CNT30115899	Oryza rufipogon	Oryza nivara	67.32	32.49	93.74	447	forward

Expression of CNT30100477

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MSMASPDTSIAMAAYGDRAPLLESALPGHSRGRRPQASVGLEGVGMGKIEGCWGG*

>peptide 2 (47 aa)
MAIELRCSKAPCLGILEGGGRRRVSASRVLAWARLRAAGADELYDGG*

Sequence

>CNT30100477
AGTAAGAGCAAATTTATCTCTAGATTATCTCTAGGATTCTATCTCTAGGGCTCTGTTTTATCTCTAAGATTCTATCTCTAGAATTGTATCATATTTTTAT
CTTTGTATTTGACTCTTATCTCTAACTAACGTATATATGTACTTCTAACAAGGTATGCGTCCGCCCACGCTGAAATCGGCCAGGCCGATGCTGTTCAGTG
CTCACTAGTAGAGGCAAGCGGCTGACCACTAACGCCAGGGGCGATGATGCGAATGCAACCTGCATCGTCTCAACTGCTCACCAGGAACAAGAACTTAATT
GCCGGTGGCCATGGTGACGTGTTAGCATGAGCATGGCGAGCCCAGACACGAGCATCGCCATGGCAGCCTATGGCGATCGAGCTCCGCTGCTCGAAAGCGC
CCTGCCTGGGCATTCTCGAGGGCGGCGGCCGCAGGCGAGTGTCGGCCTCGAGGGTGTTGGCATGGGCAAGATTGAGGGCTGCTGGGGCGGATGAGCTCTA
TGACGGCGGCTGAAGTCTAGGATGAGCACTCGCGGTCATCGCTTGATCTAGAGCGCAAGATGGGAGAACGGAAAGGCTGGAGGAAGATGAAAGAATAGAA
GGGCATTATCGGTATTTTGCATATTTTCTTTGACAAAAATAAAATAAAATAAGTATGAAACTTG